Conservation of cofitness between b3115 and b1334 in Escherichia coli BW25113

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3115 tdcD propionate kinase/acetate kinase C, anaerobic (RefSeq) 1.0 b1334 fnr DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) 0.32 18
Escherichia coli ECOR38 1.00 HEPCGN_17245 tdcD propionate kinase 1.00 HEPCGN_25925 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00585 Propionate kinase 1.00 OHPLBJKB_02348 Fumarate and nitrate reduction regulatory protein low > 73
Escherichia coli ECOR27 1.00 NOLOHH_10190 tdcD propionate kinase 1.00 NOLOHH_19940 fnr fumarate/nitrate reduction transcriptional regulator Fnr low > 57
Escherichia coli ECRC62 1.00 BNILDI_01335 tdcD propionate kinase 1.00 BNILDI_18090 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC98 0.99 JDDGAC_22045 tdcD propionate kinase 1.00 JDDGAC_04785 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC99 0.99 KEDOAH_09735 tdcD propionate kinase 1.00 KEDOAH_26530 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC101 0.99 OKFHMN_18410 tdcD propionate kinase 1.00 OKFHMN_02240 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC101 0.99 MCAODC_08925 tdcD propionate kinase 1.00 MCAODC_16030 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli ECRC102 0.99 NIAGMN_16175 tdcD propionate kinase 1.00 NIAGMN_26410 fnr fumarate/nitrate reduction transcriptional regulator Fnr — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS17930 propionate kinase 1.00 ECOLIN_RS08005 fumarate/nitrate reduction transcriptional regulator Fnr low > 52
Escherichia fergusonii Becca 0.99 EFB2_00699 Propionate kinase 1.00 EFB2_02593 Fumarate and nitrate reduction regulatory protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3208 Acetate kinase (EC 2.7.2.1) 0.99 GFF2656 Fumarate and nitrate reduction regulatory protein low > 78
Enterobacter sp. TBS_079 0.80 MPMX20_04019 Propionate kinase 0.98 MPMX20_02035 Fumarate and nitrate reduction regulatory protein low > 85
Enterobacter asburiae PDN3 0.80 EX28DRAFT_3176 acetate kinase 0.98 EX28DRAFT_1540 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 76
Rhodospirillum rubrum S1H 0.43 Rru_A1379 Acetate kinase (NCBI) 0.23 Rru_A3322 Transcriptional Regulator, Crp/Fnr family (NCBI) low > 58
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS03800 acetate kinase 0.41 RR42_RS12875 transcriptional regulator low > 128
Azospirillum sp. SherDot2 0.32 MPMX19_02847 Acetate kinase 0.27 MPMX19_00212 Nitrogen fixation regulation protein FixK low > 112
Magnetospirillum magneticum AMB-1 0.31 AMB_RS12860 acetate/propionate family kinase 0.24 AMB_RS22105 transcriptional regulator low > 64
Paraburkholderia graminis OAS925 0.31 ABIE53_006393 acetate kinase 0.35 ABIE53_004332 CRP/FNR family transcriptional regulator low > 113
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_01409 acetate kinase 0.37 H281DRAFT_01640 transcriptional regulator, Crp/Fnr family low > 103
Azospirillum brasilense Sp245 0.31 AZOBR_RS12495 acetate kinase 0.28 AZOBR_RS01145 Crp/Fnr family transcriptional regulator 0.80 13
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS19915 acetate/propionate family kinase 0.40 ABZR87_RS11180 fumarate/nitrate reduction transcriptional regulator Fnr low > 80
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03170 acetate/propionate family kinase 0.35 ABCV34_RS06835 helix-turn-helix domain-containing protein low > 48
Dinoroseobacter shibae DFL-12 0.29 Dshi_0632 acetate kinase (RefSeq) 0.17 Dshi_0660 transcriptional regulator, Crp/Fnr family (RefSeq) low > 64
Rhodanobacter denitrificans MT42 0.29 LRK55_RS17635 acetate/propionate family kinase 0.35 LRK55_RS13815 cyclic nucleotide-binding domain-containing protein low > 63
Dechlorosoma suillum PS 0.29 Dsui_3033 acetate kinase 0.41 Dsui_1646 cAMP-binding protein 0.85 28
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS13535 acetate/propionate family kinase 0.39 QEN71_RS36970 fumarate/nitrate reduction transcriptional regulator Fnr low > 153
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_07530 ackA acetate kinase 0.37 OKGIIK_00820 CRP-like protein Clp 0.58 14
Phaeobacter inhibens DSM 17395 0.27 PGA1_c28840 acetate kinase AckA 0.18 PGA1_c30140 transcriptional activator protein FnrL low > 62
Variovorax sp. SCN45 0.27 GFF3161 Acetate kinase (EC 2.7.2.1) 0.23 GFF6947 transcriptional regulator, Crp/Fnr family — —
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS01305 acetate kinase 0.41 HSERO_RS16020 transcriptional regulator — —
Burkholderia phytofirmans PsJN 0.26 BPHYT_RS26200 acetate kinase 0.39 BPHYT_RS31300 Crp/Fnr family transcriptional regulator 0.19 54
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_1675 Acetate kinase 0.57 B158DRAFT_1982 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 40
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_2551 Acetate kinase 0.16 Ga0059261_1530 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases low > 68

Not shown: 13 genomes with orthologs for b3115 only; 44 genomes with orthologs for b1334 only