Conservation of cofitness between Xcc-8004.4620.1 and Xcc-8004.2946.1 in Xanthomonas campestris pv. campestris strain 8004

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4620.1 Alanine racemase (EC 5.1.1.1) 1.0 Xcc-8004.2946.1 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) 0.63 17
Rhodanobacter denitrificans MT42 0.67 LRK55_RS00355 alanine racemase 0.60 LRK55_RS01375 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_06670 alr alanine racemase 0.60 OKGIIK_04960 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS00585 alanine racemase 0.59 LRK54_RS01595 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Klebsiella michiganensis M5al 0.40 BWI76_RS01920 alanine racemase 0.50 BWI76_RS18935 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1422 Alanine racemase (EC 5.1.1.1) 0.50 GFF3910 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) low > 78
Escherichia coli Nissle 1917 0.40 ECOLIN_RS23405 alanine racemase 0.50 ECOLIN_RS11955 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Escherichia coli BL21 0.40 ECD_03925 alanine racemase, biosynthetic, PLP-binding 0.50 ECD_01924 histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase low > 61
Escherichia fergusonii Becca 0.40 EFB2_04547 Alanine racemase, biosynthetic 0.50 EFB2_01834 Histidine biosynthesis bifunctional protein HisB low > 86
Escherichia coli ECRC62 0.40 BNILDI_06350 alr alanine racemase 0.51 BNILDI_14730 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 75
Escherichia coli ECOR38 0.40 HEPCGN_11540 alr alanine racemase 0.51 HEPCGN_03210 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03990 Alanine racemase, biosynthetic 0.50 OHPLBJKB_01678 Histidine biosynthesis bifunctional protein HisB low > 73
Escherichia coli BW25113 0.40 b4053 alr alanine racemase (NCBI) 0.50 b2022 hisB imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) low > 76
Escherichia coli ECOR27 0.40 NOLOHH_05175 alr alanine racemase 0.51 NOLOHH_15820 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 75
Escherichia coli ECRC100 0.40 OKFHMN_12925 alr alanine racemase 0.50 OKFHMN_24505 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 80
Enterobacter sp. TBS_079 0.40 MPMX20_02698 Alanine racemase, catabolic 0.50 MPMX20_03004 Histidine biosynthesis bifunctional protein HisB low > 85
Escherichia coli ECRC99 0.40 KEDOAH_15225 alr alanine racemase 0.50 KEDOAH_03645 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Escherichia coli ECRC102 0.40 NIAGMN_10770 alr alanine racemase 0.50 NIAGMN_22450 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Escherichia coli ECRC98 0.40 JDDGAC_16560 alr alanine racemase 0.50 JDDGAC_28615 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 86
Escherichia coli ECRC101 0.40 MCAODC_03435 alr alanine racemase 0.50 MCAODC_20435 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 87
Dickeya dadantii 3937 0.39 DDA3937_RS17510 alanine racemase 0.49 DDA3937_RS09725 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_01955 alanine racemase 0.52 CSW01_05760 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4259 alanine racemase 0.51 EX28DRAFT_0537 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) low > 76
Erwinia tracheiphila SCR3 0.39 LU632_RS13065 dadX catabolic alanine racemase DadX 0.49 LU632_RS08935 hisB bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Pantoea sp. MT58 0.39 IAI47_08895 catabolic alanine racemase DadX 0.49 IAI47_07080 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Dickeya dianthicola 67-19 0.39 HGI48_RS17565 alanine racemase 0.48 HGI48_RS09735 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 71
Rahnella sp. WP5 0.39 EX31_RS11885 alanine racemase 0.49 EX31_RS11450 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 89
Dickeya dianthicola ME23 0.39 DZA65_RS18650 alanine racemase 0.48 DZA65_RS10045 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 75
Pectobacterium carotovorum WPP14 0.39 HER17_RS03655 alanine racemase 0.48 HER17_RS12240 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 75
Serratia liquefaciens MT49 0.38 IAI46_22945 alanine racemase 0.48 IAI46_08200 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB low > 86
Shewanella amazonensis SB2B 0.38 Sama_3057 alr alanine racemase (RefSeq) 0.47 Sama_1944 imidazole glycerol-phosphate dehydratase/histidinol phosphatase (RefSeq) — —
Shewanella oneidensis MR-1 0.38 SO3916 alr alanine racemase, biosynthetic (NCBI ptt file) 0.47 SO2071 hisB imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.37 Shewana3_0714 alr alanine racemase (RefSeq) 0.48 Shewana3_1851 imidazole glycerol-phosphate dehydratase/histidinol phosphatase (RefSeq) — —
Shewanella loihica PV-4 0.37 Shew_3277 alr alanine racemase (RefSeq) 0.49 Shew_2200 imidazole glycerol-phosphate dehydratase/histidinol phosphatase (RefSeq) — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00544 Alanine racemase 0.50 MIT1002_02635 Histidine biosynthesis bifunctional protein HisB — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS08850 alanine racemase 0.60 ABZR86_RS06720 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —
Lysobacter sp. OAE881 0.25 ABIE51_RS09255 alanine racemase 0.75 ABIE51_RS13315 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB — —

Not shown: 56 genomes with orthologs for Xcc-8004.4620.1 only; 10 genomes with orthologs for Xcc-8004.2946.1 only