| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc01043 | | nitrogen assimilation regulatory protein | 1.0 | SM_b21176 | | phosphate uptake ABC transporter substrate-binding protein precursor | 0.46 | 11 |
| Rhizobium sp. OAE497 | 0.94 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | 0.60 | ABIE40_RS00530 | | phosphonate ABC transporter substrate-binding protein | low | > 107 |
| Agrobacterium fabrum C58 | 0.92 | Atu1446 | | two component response regulator | 0.64 | Atu0173 | | ABC transporter, substrate binding protein (phosphonate) | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.75 | TX73_013420 | | nitrogen regulation protein NR(I) | 0.23 | TX73_003620 | | phosphonate ABC transporter substrate-binding protein | low | > 86 |
| Bosea sp. OAE506 | 0.72 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | 0.23 | ABIE41_RS07715 | | phosphonate ABC transporter substrate-binding protein | low | > 77 |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS14430 | | chemotaxis protein CheY | 0.12 | AZOBR_RS29260 | | phosphonate ABC transporter substrate-binding protein | low | > 97 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.16 | MPMX26_03185 | | putative phosphite transport system-binding protein PtxB | low | > 36 |
| Rahnella sp. WP5 | 0.41 | EX31_RS15880 | | nitrogen regulation protein NR(I) | 0.32 | EX31_RS23835 | | phosphonate ABC transporter substrate-binding protein | low | > 89 |
| Serratia liquefaciens MT49 | 0.41 | IAI46_24960 | | nitrogen regulation protein NR(I) | 0.30 | IAI46_07160 | | phosphonate ABC transporter substrate-binding protein | low | > 86 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.30 | BWI76_RS05905 | | phosphonate ABC transporter substrate-binding protein | low | > 92 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_425 | | two-component response regulator NtrC | 0.10 | HP15_1728 | | phosphonate ABC transporter, periplasmic phosphonate-binding protein | low | > 73 |
| Variovorax sp. SCN45 | 0.40 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | 0.18 | GFF1615 | | Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.13 | Pf6N2E2_1609 | | Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | low | > 103 |
| Pantoea sp. MT58 | 0.40 | IAI47_00450 | | nitrogen regulation protein NR(I) | 0.30 | IAI47_07805 | | phosphonate ABC transporter substrate-binding protein | low | > 76 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.15 | PFLU_RS08745 | | phosphonate ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.13 | AO356_23405 | | phosphonate ABC transporter substrate-binding protein | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.15 | PFLU_RS08745 | | phosphonate ABC transporter substrate-binding protein | low | > 109 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | 0.32 | DZA65_RS08020 | | phosphonate ABC transporter substrate-binding protein | low | > 75 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | 0.31 | HGI48_RS07510 | | phosphonate ABC transporter substrate-binding protein | low | > 71 |
| Pseudomonas sp. S08-1 | 0.40 | OH686_10640 | | nitrogen regulation protein NR(I) | 0.13 | OH686_21205 | | ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c14790 | | nitrogen regulation protein NtrC | 0.50 | PGA1_c04190 | | phosphate uptake ABC transporter periplasmic solute-binding protein PhoD | — | — |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | 0.32 | DDA3937_RS07660 | | phosphonate ABC transporter substrate-binding protein | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.13 | Pf1N1B4_4322 | | Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | low | > 87 |
| Shewanella amazonensis SB2B | 0.39 | Sama_3427 | | response regulator receiver protein (RefSeq) | 0.12 | Sama_1543 | | putative phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) | low | > 62 |
| Pseudomonas putida KT2440 | 0.39 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.14 | PP_0824 | | phosphonate transport system-binding protein | low | > 96 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF5269 | | Nitrogen regulation protein NR(I) | 0.21 | GFF2162 | | Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) | low | > 90 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.11 | ABZR86_RS19295 | | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | low | > 74 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | 0.11 | DvMF_1258 | | phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) | low | > 51 |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_02090 | | sigma-54-dependent Fis family transcriptional regulator | 0.18 | HUW76_07100 | | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | low | > 35 |
Not shown: 63 genomes with orthologs for SMc01043 only; 0 genomes with orthologs for SM_b21176 only