| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS29655 | | amino acid ABC transporter permease | 1.0 | RR42_RS29625 | | LysR family transcriptional regulator | 0.54 | 3 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.82 | H281DRAFT_06475 | | amino acid ABC transporter membrane protein 2, PAAT family | 0.56 | H281DRAFT_01258 | | transcriptional regulator, LysR family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.81 | BPHYT_RS07680 | | ABC transporter for L-Arginine, permease component 1 (from data) | 0.57 | BPHYT_RS09410 | | LysR family transcriptional regulator | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.81 | ABIE53_001766 | | histidine transport system permease protein | 0.56 | ABIE53_006260 | | DNA-binding transcriptional LysR family regulator | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.80 | QEN71_RS23390 | | ABC transporter permease | 0.58 | QEN71_RS33285 | | LysR substrate-binding domain-containing protein | low | > 153 |
| Rahnella sp. WP5 | 0.66 | EX31_RS19550 | | ABC transporter permease | 0.30 | EX31_RS13280 | | LysR family transcriptional regulator | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.66 | PfGW456L13_4637 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | 0.25 | PfGW456L13_3120 | | LysR-family transcriptional regulator | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_27110 | | amino acid ABC transporter permease | 0.33 | AO356_26100 | | LysR family transcriptional regulator | low | > 104 |
| Pantoea sp. MT58 | 0.65 | IAI47_06295 | | ABC transporter permease | 0.33 | IAI47_03855 | | LysR family transcriptional regulator | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_2960 | | ABC transporter for L-Lysine, permease component 2 (from data) | 0.33 | Pf6N2E2_1093 | | Transcriptional regulatory protein | low | > 103 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS13380 | | ABC transporter permease | 0.32 | ECOLIN_RS15935 | | DNA-binding transcriptional regulator LysR | low | > 55 |
| Escherichia fergusonii Becca | 0.65 | EFB2_01551 | | Histidine transport system permease protein HisM | 0.32 | EFB2_01044 | | Octopine catabolism/uptake operon regulatory protein OccR | low | > 86 |
| Escherichia coli BW25113 | 0.65 | b2307 | hisM | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | 0.33 | b2839 | lysR | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
| Serratia liquefaciens MT49 | 0.65 | IAI46_17790 | | ABC transporter permease | 0.31 | IAI46_20525 | | LysR family transcriptional regulator | low | > 86 |
| Escherichia coli BL21 | 0.65 | ECD_02232 | | histidine ABC transporter permease | 0.33 | ECD_02687 | | transcriptional activator of lysA; autorepressor | low | > 61 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_21935 | hisM | Histidine transport system permease protein HisM | 0.32 | HEPCGN_19570 | lysR | DNA-binding transcriptional regulator LysR | low | > 87 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_20510 | hisM | Histidine transport system permease protein HisM | 0.32 | NIAGMN_17710 | lysR | DNA-binding transcriptional regulator LysR | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_14360 | hisM | Histidine transport system permease protein HisM | 0.33 | NOLOHH_11825 | lysR | DNA-binding transcriptional regulator LysR | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF1916 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | 0.31 | GFF1324 | | Transcriptional activator protein LysR | low | > 78 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_05455 | hisM | Histidine transport system permease protein HisM | 0.32 | KEDOAH_08190 | lysR | DNA-binding transcriptional regulator LysR | — | — |
| Escherichia coli ECRC100 | 0.64 | OKFHMN_22740 | hisM | Histidine transport system permease protein HisM | 0.32 | OKFHMN_19940 | lysR | DNA-binding transcriptional regulator LysR | low | > 80 |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_26700 | hisM | Histidine transport system permease protein HisM | 0.32 | JDDGAC_23605 | lysR | DNA-binding transcriptional regulator LysR | low | > 86 |
| Escherichia coli ECRC101 | 0.64 | MCAODC_13780 | hisM | Histidine transport system permease protein HisM | 0.32 | MCAODC_10465 | lysR | DNA-binding transcriptional regulator LysR | low | > 87 |
| Escherichia coli ECRC62 | 0.64 | BNILDI_13280 | hisM | Histidine transport system permease protein HisM | 0.32 | BNILDI_10305 | lysR | DNA-binding transcriptional regulator LysR | low | > 75 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS14415 | | ABC transporter permease | 0.28 | DDA3937_RS17430 | | LysR family transcriptional regulator | low | > 74 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS20325 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | 0.30 | BWI76_RS23365 | | LysR family transcriptional regulator | low | > 92 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_0297 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.32 | EX28DRAFT_2917 | | Transcriptional regulator | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_01398 | | Histidine transport system permease protein HisM | 0.33 | OHPLBJKB_00890 | | Octopine catabolism/uptake operon regulatory protein OccR | low | > 73 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_03242 | | Histidine transport system permease protein HisM | 0.33 | MPMX20_03706 | | Octopine catabolism/uptake operon regulatory protein OccR | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS07040 | | ABC transporter permease | 0.30 | HER17_RS03705 | | LysR family transcriptional regulator | low | > 75 |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS15315 | | ABC transporter permease | 0.28 | DZA65_RS18555 | | LysR family transcriptional regulator | low | > 75 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS14385 | | ABC transporter permease | 0.28 | HGI48_RS17490 | | LysR family transcriptional regulator | low | > 71 |
| Pseudomonas putida KT2440 | 0.45 | PP_4484 | | histidine / lysine / arginine / ornithine ABC transporter - permease subunit | 0.31 | PP_4460 | | Transcriptional regulator, LysR family | low | > 96 |
| Marinobacter adhaerens HP15 | 0.40 | HP15_3033 | | amino acid ABC transporter, inner membrane subunit | 0.19 | HP15_2808 | | protein containing LysR, substrate-binding domain | low | > 73 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF4693 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | 0.24 | GFF2706 | | Transcriptional regulatory protein | low | > 90 |
| Agrobacterium fabrum C58 | 0.35 | Atu6025 | | ABC transporter, membrane spanning protein (nopaline) | 0.25 | Atu6029 | | transcriptional regulator, LysR family for nopaline metabolism | 0.48 | 13 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_03639 | | Octopine transport system permease protein OccM | 0.32 | MPMX19_02982 | | Octopine catabolism/uptake operon regulatory protein OccR | low | > 112 |
| Azospirillum brasilense Sp245 | 0.34 | AZOBR_RS00675 | | ABC transporter permease | 0.36 | AZOBR_RS27080 | | transcriptional regulator | low | > 97 |
| Sinorhizobium meliloti 1021 | 0.28 | SMa0492 | | ABC transporter permease | 0.19 | SMc02030 | | transcriptional regulator | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_262p02380 | | putative histidine transport system permease protein HisM | 0.15 | PGA1_262p01670 | | putative transcriptional regulator, LysR family | low | > 62 |
| Bosea sp. OAE506 | 0.24 | ABIE41_RS21170 | | ABC transporter permease subunit | 0.33 | ABIE41_RS01585 | | LysR substrate-binding domain-containing protein | low | > 77 |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS09670 | artM | arginine ABC transporter permease ArtM | 0.31 | LU632_RS06035 | | LysR family transcriptional regulator | low | > 74 |
Not shown: 15 genomes with orthologs for RR42_RS29655 only; 3 genomes with orthologs for RR42_RS29625 only