Conservation of cofitness between RR42_RS29055 and RR42_RS05210 in Cupriavidus basilensis FW507-4G11

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS29055 AraC family transcriptional regulator 1.0 RR42_RS05210 malic enzyme 0.36 15
Castellaniella sp019104865 MT123 0.34 ABCV34_RS06925 helix-turn-helix domain-containing protein 0.66 ABCV34_RS01715 NADP-dependent malic enzyme low > 48
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS15620 helix-turn-helix domain-containing protein 0.65 QEN71_RS28455 NADP-dependent malic enzyme low > 153
Rhizobium sp. OAE497 0.31 ABIE40_RS19570 helix-turn-helix domain-containing protein 0.55 ABIE40_RS10450 NADP-dependent malic enzyme low > 107
Paraburkholderia graminis OAS925 0.29 ABIE53_001115 AraC family transcriptional activator of pobA 0.66 ABIE53_000015 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) low > 113
Azospirillum sp. SherDot2 0.29 MPMX19_05530 hypothetical protein 0.60 MPMX19_04254 NADP-dependent malic enzyme low > 112
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.465.1 Transcriptional regulator PobR, AraC family 0.58 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS28145 putative transcriptional regulator AraC/XylS family 0.58 AZOBR_RS21145 NADP-dependent malic enzyme low > 97
Acidovorax sp. GW101-3H11 0.26 Ac3H11_3419 Transcriptional regulator PobR, AraC family 0.66 Ac3H11_1079 NADP-dependent malic enzyme (EC 1.1.1.40) low > 79
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS19910 AraC family transcriptional regulator 0.65 HSERO_RS05745 NADP-dependent malic enzyme oxidoreductase low > 78
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_02486 AraC-family transcriptional regulator 0.54 CCNA_02704 NADP-dependent malic enzyme low > 67
Caulobacter crescentus NA1000 0.24 CCNA_02486 AraC-family transcriptional regulator 0.54 CCNA_02704 NADP-dependent malic enzyme — —
Agrobacterium fabrum C58 0.24 Atu4545 AraC family transcriptional regulator 0.55 Atu1652 NADP-dependent malic enzyme — —
Rhodopseudomonas palustris CGA009 0.23 TX73_005185 helix-turn-helix domain-containing protein 0.52 TX73_015740 NADP-dependent malic enzyme low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF447 Transcriptional regulator, AraC family 0.67 GFF3306 NADP-dependent malic enzyme (EC 1.1.1.40) low > 90
Escherichia coli ECRC62 0.20 BNILDI_07850 hpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA 0.62 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Escherichia coli ECOR27 0.20 NOLOHH_03750 hpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA 0.62 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_03717 HTH-type transcriptional activator RhaR 0.62 OHPLBJKB_01268 NADP-dependent malic enzyme low > 73
Escherichia coli BL21 0.20 ECD_04223 HpaA 0.62 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase low > 61
Serratia liquefaciens MT49 0.20 IAI46_02765 4-hydroxyphenylacetate catabolism regulatory protein HpaA 0.63 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 86
Klebsiella michiganensis M5al 0.19 BWI76_RS03835 4-hydroxyphenylacetate catabolism regulatory protein HpaA 0.61 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase low > 92
Enterobacter sp. TBS_079 0.19 MPMX20_00635 HTH-type transcriptional activator RhaR 0.62 MPMX20_03324 NADP-dependent malic enzyme low > 85
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS21715 AraC family transcriptional regulator 0.41 ABZR88_RS18305 NADP-dependent malic enzyme low > 71
Enterobacter asburiae PDN3 0.19 EX28DRAFT_3540 4-hydroxyphenylacetate catabolism regulatory protein HpaA 0.61 EX28DRAFT_0198 Malic enzyme low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF3285 Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family 0.61 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) low > 78
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS03815 AraC family transcriptional regulator 0.44 CA265_RS19000 NADP-dependent malic enzyme low > 88
Bacteroides thetaiotaomicron VPI-5482 0.13 BT1385 transcriptional regulator (NCBI ptt file) 0.41 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.12 HMPREF1058_RS00665 AraC family transcriptional regulator 0.41 HMPREF1058_RS02110 NADP-dependent malic enzyme low > 67
Dickeya dianthicola ME23 0.12 DZA65_RS07400 helix-turn-helix domain-containing protein 0.61 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 75
Rahnella sp. WP5 0.12 EX31_RS10900 helix-turn-helix domain-containing protein 0.63 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase low > 89

Not shown: 16 genomes with orthologs for RR42_RS29055 only; 39 genomes with orthologs for RR42_RS05210 only