Conservation of cofitness between Psyr_4754 and Psyr_2133 in Pseudomonas syringae pv. syringae B728a

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.0 Psyr_2133 Pseudouridine synthase 0.26 12
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.00 Psyr_2133 Pseudouridine synthase 0.40 42
Pseudomonas stutzeri RCH2 0.73 Psest_0255 RNA methyltransferase, RsmD family 0.59 Psest_3527 Pseudouridylate synthases, 23S RNA-specific — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.72 Pf6N2E2_2426 Similar to ribosomal large subunit pseudouridine synthase A low > 103
Pseudomonas sp. S08-1 0.72 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.58 OH686_18350 Pseudouridine synthase , type low > 80
Pseudomonas sp. RS175 0.71 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.72 PFR28_01002 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.72 AO353_19240 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.72 AO356_03000 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.70 Pf1N1B4_239 Similar to ribosomal large subunit pseudouridine synthase A — —
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.76 PFLU_RS08610 pseudouridine synthase low > 109
Pseudomonas fluorescens SBW25 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.76 PFLU_RS08610 pseudouridine synthase low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.72 PfGW456L13_2270 Similar to ribosomal large subunit pseudouridine synthase A low > 87
Pseudomonas simiae WCS417 0.70 PS417_26825 16S rRNA methyltransferase 0.72 PS417_08655 pseudouridine synthase — —
Pseudomonas putida KT2440 0.68 PP_5114 putative adenine methyltransferase 0.64 PP_2110 putative ribosomal large subunit pseudouridine synthase low > 96
Shewanella sp. ANA-3 0.46 Shewana3_3973 putative methyltransferase (RefSeq) 0.30 Shewana3_3712 pseudouridine synthase (RefSeq) low > 73
Shewanella loihica PV-4 0.44 Shew_3607 putative methyltransferase (RefSeq) 0.32 Shew_3348 pseudouridine synthase (RefSeq) low > 60
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.54 OKGIIK_09070 Pseudouridine synthase low > 52
Shewanella amazonensis SB2B 0.42 Sama_3469 hypothetical protein (RefSeq) 0.32 Sama_0506 pseudouridine synthase (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.60 LRK55_RS15670 RluA family pseudouridine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.60 LRK54_RS15915 RluA family pseudouridine synthase low > 59
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.33 B158DRAFT_1363 Pseudouridylate synthases, 23S RNA-specific low > 40
Acinetobacter radioresistens SK82 0.36 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.35 MPMX26_01205 hypothetical protein low > 36
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS20695 methyltransferase 0.41 HSERO_RS13490 pseudouridine synthase low > 78
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.44 Ac3H11_4190 Similar to ribosomal large subunit pseudouridine synthase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.41 GFF5185 Similar to ribosomal large subunit pseudouridine synthase A low > 90
Mycobacterium tuberculosis H37Rv 0.22 Rv2966c Possible methyltransferase (methylase) 0.29 Rv3300c Conserved hypothetical protein — —

Not shown: 58 genomes with orthologs for Psyr_4754 only; 4 genomes with orthologs for Psyr_2133 only