Conservation of cofitness between Psyr_0366 and Psyr_1610 in Pseudomonas syringae pv. syringae B728a

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0366 transcriptional regulator, GntR family 1.0 Psyr_1610 ribosomal large subunit pseudouridine synthase A 0.31 13
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0366 transcriptional regulator, GntR family 1.00 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_329 Histidine utilization repressor 0.90 PfGW456L13_4194 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3807 Histidine utilization repressor 0.92 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_09640 histidine utilization repressor 0.92 AO356_19405 pseudouridine synthase low > 104
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_12240 histidine utilization repressor 0.92 AO353_02385 pseudouridine synthase — —
Pseudomonas sp. RS175 0.81 PFR28_04963 HTH-type transcriptional repressor NagR 0.92 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA low > 88
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1590 Histidine utilization repressor 0.91 Pf1N1B4_3753 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS01765 histidine utilization repressor 0.90 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas simiae WCS417 0.80 PS417_01710 histidine utilization repressor 0.89 PS417_19475 pseudouridine synthase low > 88
Pseudomonas fluorescens SBW25 0.80 PFLU_RS01765 histidine utilization repressor 0.90 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas putida KT2440 0.79 PP_5035 Histidine utilization repressor 0.87 PP_1731 23S rRNA (746) and tRNA (32) pseudouridine synthase low > 96
Dickeya dadantii 3937 0.59 DDA3937_RS15020 histidine utilization repressor 0.47 DDA3937_RS18240 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS15850 histidine utilization repressor 0.47 DZA65_RS19315 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Serratia liquefaciens MT49 0.58 IAI46_10615 histidine utilization repressor 0.46 IAI46_03270 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Dickeya dianthicola 67-19 0.58 HGI48_RS15100 histidine utilization repressor 0.46 HGI48_RS18175 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 71
Klebsiella michiganensis M5al 0.58 BWI76_RS08730 histidine utilization repressor 0.47 BWI76_RS04565 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA low > 92
Enterobacter sp. TBS_079 0.58 MPMX20_01398 HTH-type transcriptional repressor NagR 0.48 MPMX20_00752 Dual-specificity RNA pseudouridine synthase RluA low > 85
Enterobacter asburiae PDN3 0.57 EX28DRAFT_2221 histidine utilization repressor, proteobacterial 0.48 EX28DRAFT_3650 pseudouridine synthase, RluA family low > 76
Pantoea sp. MT58 0.56 IAI47_13270 histidine utilization repressor 0.50 IAI47_16060 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Rahnella sp. WP5 0.56 EX31_RS06725 histidine utilization repressor 0.48 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF665 Histidine utilization repressor 0.49 GFF184 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 78
Variovorax sp. SCN45 0.44 GFF6410 Histidine utilization repressor 0.36 GFF7036 LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) low > 127
Shewanella loihica PV-4 0.43 Shew_3758 histidine utilization repressor (RefSeq) 0.46 Shew_0783 pseudouridylate synthase (RefSeq) — —
Acidovorax sp. GW101-3H11 0.42 Ac3H11_2559 Histidine utilization repressor 0.40 Ac3H11_174 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 79
Shewanella sp. ANA-3 0.41 Shewana3_0099 histidine utilization repressor (RefSeq) 0.45 Shewana3_0799 ribosomal large subunit pseudouridine synthase A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.41 Sama_0081 histidine utilization repressor (RefSeq) 0.44 Sama_0606 pseudouridylate synthase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1434 histidine utilization repressor, proteobacterial 0.44 B158DRAFT_1514 Pseudouridylate synthases, 23S RNA-specific low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3591 Histidine utilization repressor 0.44 GFF3559 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 90
Pseudomonas sp. S08-1 0.36 OH686_16760 histidine utilization repressor 0.88 OH686_19760 LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS06610 histidine utilization repressor 0.25 A4249_RS07880 RluA family pseudouridine synthase low > 48
Phaeobacter inhibens DSM 17395 0.16 PGA1_c36370 HTH-type transcriptional regulator, GntR family 0.46 PGA1_c33080 ribosomal large subunit pseudouridine synthase A low > 62
Escherichia coli BL21 0.15 ECD_03225 putative DNA-binding transcriptional regulator 0.49 ECD_00060 dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent low > 61
Escherichia coli BW25113 0.15 b3375 yhfR putative transcriptional regulator (VIMSS) 0.49 b0058 rluA pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00328 putative fructoselysine utilization operon transcriptional repressor 0.49 OHPLBJKB_03600 Ribosomal large subunit pseudouridine synthase A low > 73
Pectobacterium carotovorum WPP14 0.12 HER17_RS13540 GntR family transcriptional regulator 0.47 HER17_RS02985 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75

Not shown: 23 genomes with orthologs for Psyr_0366 only; 17 genomes with orthologs for Psyr_1610 only