Conservation of cofitness between PP_1649 and PP_4009 in Pseudomonas putida KT2440

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1649 D-lactate dehydrogenase 1.0 PP_4009 ATP-dependent Clp protease adapter protein ClpS 0.17 1
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_02740 hydroxyacid dehydrogenase 0.90 AO353_27680 ATP-dependent Clp protease adaptor ClpS low > 101
Pseudomonas fluorescens FW300-N2C3 0.79 AO356_19040 hydroxyacid dehydrogenase 0.90 AO356_22145 ATP-dependent Clp protease adaptor ClpS low > 104
Pseudomonas simiae WCS417 0.78 PS417_16375 2-hydroxyacid dehydrogenase 0.88 PS417_16515 Clp protease ClpS low > 88
Pseudomonas fluorescens SBW25 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.88 PFLU_RS18555 ATP-dependent Clp protease adapter ClpS low > 109
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.88 PFLU_RS18555 ATP-dependent Clp protease adapter ClpS low > 109
Pseudomonas stutzeri RCH2 0.69 Psest_4064 Lactate dehydrogenase and related dehydrogenases 0.83 Psest_2026 Uncharacterized conserved protein low > 67
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS07830 2-hydroxyacid dehydrogenase 0.46 RALBFv3_RS04815 ATP-dependent Clp protease adaptor ClpS low > 76
Ralstonia solanacearum UW163 0.68 UW163_RS05795 2-hydroxyacid dehydrogenase 0.46 UW163_RS08855 ATP-dependent Clp protease adaptor ClpS — —
Pseudomonas sp. S08-1 0.68 OH686_18940 D-lactate dehydrogenase 0.87 OH686_00230 ATP-dependent Clp protease adaptor protein ClpS 0.70 50
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS03505 2-hydroxyacid dehydrogenase 0.46 ABZR87_RS00440 ATP-dependent Clp protease adapter ClpS low > 80
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS03835 D-lactate dehydrogenase 0.46 BPHYT_RS15715 ATP-dependent Clp protease adapter protein ClpS low > 109
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04746 D-lactate dehydrogenase 0.46 H281DRAFT_04083 ATP-dependent Clp protease adaptor protein ClpS low > 103
Ralstonia solanacearum GMI1000 0.66 RS_RS15730 2-hydroxyacid dehydrogenase 0.46 RS_RS12375 ATP-dependent Clp protease adaptor ClpS low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS26130 2-hydroxyacid dehydrogenase 0.44 QEN71_RS03000 ATP-dependent Clp protease adapter ClpS low > 153
Paraburkholderia graminis OAS925 0.65 ABIE53_000908 D-lactate dehydrogenase 0.46 ABIE53_003307 ATP-dependent Clp protease adaptor protein ClpS low > 113
Ralstonia solanacearum PSI07 0.64 RPSI07_RS09445 2-hydroxyacid dehydrogenase 0.46 RPSI07_RS12570 ATP-dependent Clp protease adaptor ClpS low > 81
Agrobacterium fabrum C58 0.56 Atu3870 D-lactate dehydrogenase 0.43 Atu1363 ATP-dependent Clp protease adaptor protein ClpS — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS12550 D-lactate dehydrogenase 0.42 HSERO_RS07025 ATP-dependent Clp protease ClpS low > 78
Klebsiella michiganensis M5al 0.52 BWI76_RS12790 lactate dehydrogenase 0.50 BWI76_RS09610 ATP-dependent Clp protease adaptor ClpS low > 92
Escherichia coli BW25113 0.52 b1380 ldhA D-lactate dehydrogenase (NCBI) 0.49 b0881 clpS ATP-dependent Clp protease adaptor protein ClpS (NCBI) low > 76
Escherichia coli ECOR27 0.52 NOLOHH_19530 ldhA D-lactate dehydrogenase 0.49 NOLOHH_22185 clpS ATP-dependent Clp protease adapter ClpS low > 57
Escherichia coli ECOR38 0.52 HEPCGN_26050 ldhA D-lactate dehydrogenase 0.49 HEPCGN_22895 clpS ATP-dependent Clp protease adapter ClpS low > 85
Escherichia coli Nissle 1917 0.51 ECOLIN_RS08110 D-lactate dehydrogenase 0.49 ECOLIN_RS04690 ATP-dependent Clp protease adapter ClpS low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_02331 D-lactate dehydrogenase 0.49 OHPLBJKB_02787 ATP-dependent Clp protease adapter protein ClpS low > 73
Escherichia coli ECRC102 0.51 NIAGMN_25930 ldhA D-lactate dehydrogenase 0.49 NIAGMN_03830 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli ECRC98 0.51 JDDGAC_04285 ldhA D-lactate dehydrogenase 0.49 JDDGAC_09425 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli ECRC101 0.51 OKFHMN_01795 ldhA D-lactate dehydrogenase 0.49 OKFHMN_05790 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli ECRC99 0.51 KEDOAH_26640 ldhA D-lactate dehydrogenase 0.49 KEDOAH_22120 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia coli BL21 0.51 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.49 ECD_00886 regulatory protein for ClpA substrate specificity low > 60
Escherichia coli ECRC101 0.51 MCAODC_16140 ldhA D-lactate dehydrogenase 0.49 MCAODC_25005 clpS ATP-dependent Clp protease adapter ClpS — —
Escherichia fergusonii Becca 0.51 EFB2_02576 D-lactate dehydrogenase 0.49 EFB2_03180 ATP-dependent Clp protease adapter protein ClpS low > 86
Escherichia coli ECRC62 0.51 BNILDI_17985 ldhA D-lactate dehydrogenase 0.49 BNILDI_20440 clpS ATP-dependent Clp protease adapter ClpS — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) 0.48 GFF4902 ATP-dependent Clp protease adaptor protein ClpS low > 78
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_0219 Lactate dehydrogenase and related dehydrogenases 0.40 Ga0059261_1285 Uncharacterized conserved protein low > 68
Enterobacter sp. TBS_079 0.50 MPMX20_02132 D-lactate dehydrogenase 0.49 MPMX20_01543 ATP-dependent Clp protease adapter protein ClpS low > 85
Enterobacter asburiae PDN3 0.50 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases 0.49 EX28DRAFT_2051 Uncharacterized conserved protein low > 76
Pectobacterium carotovorum WPP14 0.47 HER17_RS09630 2-hydroxyacid dehydrogenase 0.50 HER17_RS12405 ATP-dependent Clp protease adapter ClpS low > 75

Not shown: 26 genomes with orthologs for PP_1649 only; 22 genomes with orthologs for PP_4009 only