Conservation of cofitness between PP_5348 and PP_3417 in Pseudomonas putida KT2440

21 genomes with putative orthologs of both genes

Organism	Ratio1	Gene1	Name1	Description1	Ratio2	Gene2	Name2	Description2	Cofit	Rank
Pseudomonas putida KT2440	1.0	PP_5348		Transcriptional regulator, LysR family	1.0	PP_3417		D-gluconate transporter	0.59	9
Pseudomonas fluorescens FW300-N2E3	0.87	AO353_10035		LysR family transcriptional regulator	0.75	AO353_03245		permease DsdX	low	> 101
Pseudomonas sp. RS175	0.86	PFR28_04519		HTH-type transcriptional activator CmpR	0.75	PFR28_00595		High-affinity gluconate transporter	0.29	32
Pseudomonas fluorescens FW300-N2C3	0.85	AO356_12015		LysR family transcriptional regulator	0.75	AO356_05055		permease DsdX	low	> 104
Pseudomonas fluorescens FW300-N1B4	0.85	Pf1N1B4_2009		LysR family transcriptional regulator PA5437	0.74	Pf1N1B4_556		Gluconate permease	low	> 87
Pseudomonas fluorescens SBW25	0.84	PFLU_RS29885		LysR family transcriptional regulator	0.77	PFLU_RS23585		GntP family permease	low	> 109
Pseudomonas fluorescens SBW25-INTG	0.84	PFLU_RS29885		LysR family transcriptional regulator	0.77	PFLU_RS23585		GntP family permease	0.52	10
Pseudomonas simiae WCS417	0.84	PS417_28220		LysR family transcriptional regulator	0.77	PS417_21980		permease DsdX	low	> 88
Pseudomonas fluorescens GW456-L13	0.84	PfGW456L13_727		LysR family transcriptional regulator PA5437	0.74	PfGW456L13_1927		Gluconate permease	low	> 87
Pseudomonas fluorescens FW300-N2E2	0.83	Pf6N2E2_4277		LysR family transcriptional regulator PA5437	0.75	Pf6N2E2_2863		Gluconate permease	0.47	63
Pseudomonas syringae pv. syringae B728a ΔmexB	0.80	Psyr_5062		transcriptional regulator, LysR family	0.83	Psyr_3338		gluconate permease GntT	low	> 86
Pseudomonas syringae pv. syringae B728a	0.80	Psyr_5062		transcriptional regulator, LysR family	0.83	Psyr_3338		gluconate permease GntT	low	> 86
Paraburkholderia bryophila 376MFSha3.1	0.35	H281DRAFT_03013		transcriptional regulator, LysR family	0.52	H281DRAFT_04276		gluconate permease GntT	low	> 103
Paraburkholderia graminis OAS925	0.34	ABIE53_005077		DNA-binding transcriptional LysR family regulator	0.52	ABIE53_003515		GntP family gluconate:H+ symporter	low	> 113
Burkholderia phytofirmans PsJN	0.34	BPHYT_RS29890		LysR family transcriptional regulator	0.53	BPHYT_RS13375		permease	—	—
Paraburkholderia sabiae LMG 24235	0.33	QEN71_RS20425		LysR family transcriptional regulator	0.53	QEN71_RS26910		GntP family permease	low	> 153
Rhodospirillum rubrum S1H	0.33	Rru_A2401		RuBisCO transcriptional regulator cbbR, LysR family (NCBI)	0.38	Rru_A3140		Gluconate transporter (NCBI)	low	> 58
Shewanella loihica PV-4	0.33	Shew_1245		LysR family transcriptional regulator (RefSeq)	0.23	Shew_2533		gluconate transporter (RefSeq)	low	> 60
Cupriavidus basilensis FW507-4G11	0.33	RR42_RS31340		transcriptional regulator	0.56	RR42_RS28835		gluconate:H+ symporter (gntT) (from data)	low	> 128
Acidovorax sp. GW101-3H11	0.31	Ac3H11_3174		RuBisCO operon transcriptional regulator	0.28	Ac3H11_3740		Gluconate permease	low	> 79
Shewanella oneidensis MR-1	0.23	SO3757	rbcR	rubisco operon transcriptional regulator (NCBI ptt file)	0.22	SO1771		permease, GntP family (NCBI ptt file)	low	> 76
Shewanella sp. ANA-3	0.22	Shewana3_0835		LysR family transcriptional regulator (RefSeq)	0.21	Shewana3_2684		gluconate transporter (RefSeq)	low	> 73

Not shown: 10 genomes with orthologs for PP_5348 only; 39 genomes with orthologs for PP_3417 only