| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | 1.0 | PP_2320 | | conserved exported protein of unknown function | 0.36 | 6 |
| Pseudomonas fluorescens SBW25 | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.82 | PFLU_RS08365 | | L,D-transpeptidase family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.83 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.82 | PFLU_RS08365 | | L,D-transpeptidase family protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.83 | PS417_06245 | | zinc metallopeptidase RseP | 0.81 | PS417_08415 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.82 | AO353_16495 | | zinc metallopeptidase RseP | 0.87 | AO353_19015 | | hypothetical protein | low | > 101 |
| Pseudomonas sp. RS175 | 0.82 | PFR28_00403 | | Regulator of sigma-E protease RseP | 0.87 | PFR28_00960 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.82 | AO356_06005 | | zinc metallopeptidase RseP | 0.86 | AO356_03215 | | hypothetical protein | 0.35 | 67 |
| Pseudomonas fluorescens GW456-L13 | 0.81 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | 0.87 | PfGW456L13_2221 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | 0.86 | Pf6N2E2_2474 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.82 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.81 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.82 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.80 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | 0.87 | Pf1N1B4_292 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_2835 | | RIP metalloprotease RseP | 0.72 | Psest_2334 | | Uncharacterized protein conserved in bacteria | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_06450 | | RIP metalloprotease RseP | 0.79 | OH686_01780 | | L,D-transpeptidase | — | — |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1173 | | membrane-associated zinc metalloprotease | 0.37 | HP15_3824 | | ErfK/YbiS/YcfS/YnhG family protein | low | > 73 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_3764 | | RIP metalloprotease RseP | 0.31 | EX28DRAFT_1817 | | Uncharacterized protein conserved in bacteria | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | 0.30 | OHPLBJKB_02046 | | putative L,D-transpeptidase YnhG | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_09150 | rseP | sigma E protease regulator RseP | 0.29 | BNILDI_19165 | ldtC | L,D-transpeptidase LdtC | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_00690 | rseP | sigma E protease regulator RseP | 0.30 | MCAODC_18130 | ldtE | L,D-transpeptidase LdtE | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_15495 | | sigma E protease regulator RseP | 0.36 | IAI47_10850 | | L,D-transpeptidase family protein | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | 0.30 | KEDOAH_00830 | ldtE | L,D-transpeptidase LdtE | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | 0.31 | GFF3396 | | L,D-transpeptidase YcfS | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | 0.30 | JDDGAC_01855 | ldtE | L,D-transpeptidase LdtE | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | 0.30 | OKFHMN_27280 | ldtE | L,D-transpeptidase LdtE | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | 0.30 | NOLOHH_17800 | ldtE | L,D-transpeptidase LdtE | — | — |
| Escherichia coli BL21 | 0.43 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | 0.30 | ECD_01647 | | murein L,D-transpeptidase | — | — |
| Escherichia fergusonii Becca | 0.43 | EFB2_03868 | | Regulator of sigma-E protease RseP | 0.30 | EFB2_02314 | | putative L,D-transpeptidase YnhG | — | — |
| Escherichia coli BW25113 | 0.43 | b0176 | yaeL | zinc metallopeptidase (NCBI) | 0.30 | b1678 | ynhG | hypothetical protein (NCBI) | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | 0.30 | NIAGMN_00785 | ldtE | L,D-transpeptidase LdtE | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | 0.30 | HEPCGN_05665 | ldtE | L,D-transpeptidase LdtE | — | — |
| Escherichia coli Nissle 1917 | 0.43 | ECOLIN_RS00960 | | sigma E protease regulator RseP | 0.30 | ECOLIN_RS09385 | | L,D-transpeptidase LdtE | — | — |
| Serratia liquefaciens MT49 | 0.42 | IAI46_20225 | | sigma E protease regulator RseP | 0.34 | IAI46_11175 | | L,D-transpeptidase family protein | — | — |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.26 | LU632_RS09245 | | L,D-transpeptidase family protein | 0.83 | 52 |
| Pectobacterium carotovorum WPP14 | 0.41 | HER17_RS16300 | | sigma E protease regulator RseP | 0.35 | HER17_RS08950 | | L,D-transpeptidase family protein | low | > 75 |
| Shewanella loihica PV-4 | 0.41 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.34 | Shew_1006 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS05250 | | zinc metallopeptidase RseP | 0.30 | BWI76_RS11200 | | transpeptidase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_11475 | | zinc metalloprotease | 0.34 | CSW01_14325 | | peptidase | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | 0.30 | Sama_0726 | | ErfK/YbiS/YcfS/YnhG (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.40 | EX31_RS13000 | | sigma E protease regulator RseP | 0.35 | EX31_RS13880 | | L,D-transpeptidase family protein | — | — |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS05490 | | sigma E protease regulator RseP | 0.35 | DZA65_RS13280 | | L,D-transpeptidase family protein | low | > 75 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS05150 | | sigma E protease regulator RseP | 0.33 | DDA3937_RS12750 | | L,D-transpeptidase family protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS05150 | | sigma E protease regulator RseP | 0.35 | HGI48_RS12815 | | L,D-transpeptidase family protein | low | > 71 |
Not shown: 41 genomes with orthologs for PP_1598 only; 0 genomes with orthologs for PP_2320 only