Conservation of cofitness between PP_1649 and PP_1824 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1649 D-lactate dehydrogenase 1.0 PP_1824 Smr domain protein 0.14 18
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_02740 hydroxyacid dehydrogenase 0.86 AO353_02280 DNA mismatch repair protein MutS low > 101
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_3500 D-lactate dehydrogenase (EC 1.1.1.28) 0.86 Pf1N1B4_3774 Smr domain protein — —
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) 0.87 Pf6N2E2_5816 Smr domain protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.79 AO356_19040 hydroxyacid dehydrogenase 0.87 AO356_19510 DNA mismatch repair protein MutS — —
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) 0.86 PfGW456L13_4172 Smr domain protein low > 87
Pseudomonas simiae WCS417 0.78 PS417_16375 2-hydroxyacid dehydrogenase 0.84 PS417_19345 DNA mismatch repair protein MutS — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.86 PFLU_RS21310 Smr/MutS family protein low > 109
Pseudomonas sp. RS175 0.77 PFR28_03228 D-lactate dehydrogenase 0.85 PFR28_03132 putative DNA endonuclease SmrA low > 88
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS18415 2-hydroxyacid dehydrogenase 0.86 PFLU_RS21310 Smr/MutS family protein low > 109
Pseudomonas stutzeri RCH2 0.69 Psest_4064 Lactate dehydrogenase and related dehydrogenases 0.83 Psest_1993 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas sp. S08-1 0.68 OH686_18940 D-lactate dehydrogenase 0.83 OH686_00650 Smr domain protein low > 80
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_14945 2-hydroxyacid dehydrogenase 0.27 CSW01_11330 DNA endonuclease SmrA low > 62
Shewanella amazonensis SB2B 0.55 Sama_0612 D-lactate dehydrogenase (RefSeq) 0.19 Sama_2161 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.54 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.24 Shewana3_2157 Smr protein/MutS2 (RefSeq) low > 73
Shewanella loihica PV-4 0.54 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) 0.21 Shew_2418 hypothetical protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.54 SO0968 ldhA D-lactate dehydrogenase (NCBI ptt file) 0.23 SO2495 Smr domain protein (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.52 BWI76_RS12790 lactate dehydrogenase 0.22 BWI76_RS16155 hypothetical protein — —
Escherichia coli BW25113 0.52 b1380 ldhA D-lactate dehydrogenase (NCBI) 0.21 b1340 ydaL hypothetical protein (NCBI) — —
Escherichia coli ECOR38 0.52 HEPCGN_26050 ldhA D-lactate dehydrogenase 0.21 HEPCGN_25970 smrA DNA endonuclease SmrA low > 85
Escherichia coli ECOR27 0.52 NOLOHH_19530 ldhA D-lactate dehydrogenase 0.21 NOLOHH_19905 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC98 0.51 JDDGAC_04285 ldhA D-lactate dehydrogenase 0.21 JDDGAC_04750 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC101 0.51 OKFHMN_01795 ldhA D-lactate dehydrogenase 0.21 OKFHMN_02190 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC99 0.51 KEDOAH_26640 ldhA D-lactate dehydrogenase 0.21 KEDOAH_26565 smrA DNA endonuclease SmrA — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS08110 D-lactate dehydrogenase 0.22 ECOLIN_RS08040 DNA endonuclease SmrA low > 52
Escherichia coli ECRC101 0.51 MCAODC_16140 ldhA D-lactate dehydrogenase 0.21 MCAODC_16065 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC102 0.51 NIAGMN_25930 ldhA D-lactate dehydrogenase 0.21 NIAGMN_26360 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC62 0.51 BNILDI_17985 ldhA D-lactate dehydrogenase 0.21 BNILDI_18055 smrA DNA endonuclease SmrA — —
Escherichia fergusonii Becca 0.51 EFB2_02576 D-lactate dehydrogenase 0.21 EFB2_02588 putative DNA endonuclease SmrA low > 86
Escherichia coli BL21 0.51 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent 0.21 ECD_01317 DNA endonuclease low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_02331 D-lactate dehydrogenase 0.21 OHPLBJKB_02342 putative DNA endonuclease SmrA low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) 0.22 GFF2654 FIG00638524: hypothetical protein low > 78
Enterobacter sp. TBS_079 0.50 MPMX20_02132 D-lactate dehydrogenase 0.20 MPMX20_02041 putative DNA endonuclease SmrA low > 85
Enterobacter asburiae PDN3 0.50 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases 0.21 EX28DRAFT_1533 Uncharacterized protein conserved in bacteria low > 76
Alteromonas macleodii MIT1002 0.50 MIT1002_01974 D-lactate dehydrogenase 0.26 MIT1002_01029 putative DNA endonuclease SmrA low > 70
Serratia liquefaciens MT49 0.50 IAI46_13355 2-hydroxyacid dehydrogenase 0.22 IAI46_19830 DNA endonuclease SmrA low > 86
Rahnella sp. WP5 0.49 EX31_RS06470 2-hydroxyacid dehydrogenase 0.24 EX31_RS07180 DNA endonuclease SmrA low > 89
Dickeya dadantii 3937 0.49 DDA3937_RS12295 2-hydroxyacid dehydrogenase 0.23 DDA3937_RS12085 DNA endonuclease SmrA low > 74
Pectobacterium carotovorum WPP14 0.47 HER17_RS09630 2-hydroxyacid dehydrogenase 0.21 HER17_RS06925 endonuclease SmrB low > 75

Not shown: 25 genomes with orthologs for PP_1649 only; 15 genomes with orthologs for PP_1824 only