Conservation of cofitness between PP_0937 and PP_1803 in Pseudomonas putida KT2440

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0937 endoribonuclease G (RNAse G) 1.0 PP_1803 UDP-sugar epimerase 0.49 16
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05230 ribonuclease G 0.62 AO353_01980 NAD-dependent dehydratase low > 101
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_07110 ribonuclease G 0.36 AO356_03355 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.54 Pf1N1B4_339 UDP-glucose 4-epimerase (EC 5.1.3.2) low > 87
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4159 RNAse G 0.54 Psyr_3638 UDP-glucose 4-epimerase, putative low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4159 RNAse G 0.54 Psyr_3638 UDP-glucose 4-epimerase, putative low > 86
Pseudomonas sp. S08-1 0.89 OH686_08595 Ribonuclease G 0.53 OH686_20905 UDP-glucose 4-epimerase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3323 ribonuclease, Rne/Rng family 0.55 Psest_1823 Nucleoside-diphosphate-sugar epimerases low > 67
Marinobacter adhaerens HP15 0.68 HP15_2451 ribonuclease, Rne/Rng family 0.32 HP15_2386 UDP-glucose 4-epimerase low > 73
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS24430 ribonuclease G 0.39 QEN71_RS25600 SDR family oxidoreductase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04515 RNAse G 0.39 H281DRAFT_04849 UDP-glucose 4-epimerase low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_001538 ribonuclease G 0.39 ABIE53_001161 nucleoside-diphosphate-sugar epimerase low > 113
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS06375 ribonuclease 0.42 BPHYT_RS04375 epimerase
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS17790 ribonuclease 0.54 HSERO_RS02375 NAD-dependent dehydratase
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_02205 ribonuclease E/G 0.50 CSW01_01355 UDP-glucose 4-epimerase low > 62
Dickeya dadantii 3937 0.57 DDA3937_RS01450 ribonuclease G 0.45 DDA3937_RS03415 NAD-dependent epimerase/dehydratase family protein low > 74
Dickeya dianthicola 67-19 0.57 HGI48_RS01370 ribonuclease G 0.44 HGI48_RS03515 NAD-dependent epimerase/dehydratase family protein low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS01430 ribonuclease G 0.44 DZA65_RS03630 NAD-dependent epimerase/dehydratase family protein low > 75
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.36 EX28DRAFT_0516 Nucleoside-diphosphate-sugar epimerases low > 76
Escherichia coli ECOR27 0.57 NOLOHH_09530 rng ribonuclease G 0.16 NOLOHH_15730 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase low > 57
Escherichia coli ECRC99 0.57 KEDOAH_10405 rng ribonuclease G 0.16 KEDOAH_03750 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase
Escherichia fergusonii Becca 0.57 EFB2_00584 Ribonuclease G 0.12 EFB2_00831 2-alkyl-3-oxoalkanoate reductase low > 86
Escherichia coli ECRC101 0.57 MCAODC_08265 rng ribonuclease G 0.16 MCAODC_20540 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase
Escherichia coli ECRC101 0.57 OKFHMN_17745 rng ribonuclease G 0.16 OKFHMN_24400 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase
Escherichia coli ECRC98 0.57 JDDGAC_21370 rng ribonuclease G 0.16 JDDGAC_28510 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18605 ribonuclease G 0.12 ECOLIN_RS17160 NAD-dependent epimerase/dehydratase family protein 0.58 17
Escherichia coli ECOR38 0.57 HEPCGN_16610 rng ribonuclease G 0.12 HEPCGN_17975 wcaG short-chain dehydrogenase low > 85
Escherichia coli ECRC62 0.57 BNILDI_01990 rng ribonuclease G 0.12 BNILDI_00620 wcaG short-chain dehydrogenase
Escherichia coli BL21 0.57 ECD_03106 ribonuclease G 0.12 ECD_02852 hypothetical protein low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00458 Ribonuclease G 0.12 OHPLBJKB_00723 2-alkyl-3-oxoalkanoate reductase low > 73
Escherichia coli ECRC102 0.57 NIAGMN_15505 rng ribonuclease G 0.16 NIAGMN_22345 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase
Shewanella oneidensis MR-1 0.56 SO4094 cafA ribonuclease G (NCBI ptt file) 0.44 SO3173 UDP-galactose 4-epimerase, putative (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.56 IAI46_22700 ribonuclease G 0.14 IAI46_15590 NAD-dependent epimerase/dehydratase family protein low > 86
Shewanella amazonensis SB2B 0.56 Sama_0471 ribonuclease G (RefSeq) 0.25 Sama_2249 hypothetical protein (RefSeq) low > 62
Castellaniella sp019104865 MT123 0.55 ABCV34_RS02480 ribonuclease G 0.34 ABCV34_RS13025 NAD-dependent epimerase/dehydratase family protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.48 GFF1863 UDP-glucose 4-epimerase (EC 5.1.3.2) low > 90
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS20445 Rne/Rng family ribonuclease 0.16 ABZR88_RS03025 NAD(P)-dependent oxidoreductase

Not shown: 36 genomes with orthologs for PP_0937 only; 12 genomes with orthologs for PP_1803 only