Conservation of cofitness between PP_3417 and PP_0364 in Pseudomonas putida KT2440

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3417 D-gluconate transporter 1.0 PP_0364 pimeloyl-[acp] methyl ester esterase 0.51 10
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3338 gluconate permease GntT 0.57 Psyr_4685 bioH protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3338 gluconate permease GntT 0.57 Psyr_4685 bioH protein — —
Pseudomonas fluorescens SBW25 0.77 PFLU_RS23585 GntP family permease 0.59 PFLU_RS27640 alpha/beta fold hydrolase 0.56 19
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS23585 GntP family permease 0.59 PFLU_RS27640 alpha/beta fold hydrolase 0.36 18
Pseudomonas simiae WCS417 0.77 PS417_21980 permease DsdX 0.60 PS417_25995 transporter — —
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2863 Gluconate permease 0.58 Pf6N2E2_4762 Biotin synthesis protein BioH 0.33 45
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03245 permease DsdX 0.61 AO353_07515 transporter low > 101
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05055 permease DsdX 0.59 AO356_14145 transporter low > 104
Pseudomonas sp. RS175 0.75 PFR28_00595 High-affinity gluconate transporter 0.59 PFR28_04101 Pimeloyl-[acyl-carrier protein] methyl ester esterase — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1927 Gluconate permease 0.60 PfGW456L13_1149 Biotin synthesis protein BioH — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_556 Gluconate permease 0.61 Pf1N1B4_2489 Biotin synthesis protein BioH low > 87
Enterobacter sp. TBS_079 0.46 MPMX20_04302 High-affinity gluconate transporter 0.21 MPMX20_04299 Pimeloyl-[acyl-carrier protein] methyl ester esterase low > 85
Pantoea sp. MT58 0.45 IAI47_14085 gluconate transporter 0.20 IAI47_01790 pimeloyl-ACP methyl ester esterase BioH low > 76
Dickeya dianthicola 67-19 0.45 HGI48_RS19890 gluconate transporter 0.17 HGI48_RS19775 pimeloyl-ACP methyl ester esterase BioH — —
Dickeya dianthicola ME23 0.45 DZA65_RS20960 gluconate transporter 0.17 DZA65_RS20865 pimeloyl-ACP methyl ester esterase BioH low > 75
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4127 gluconate transporter 0.22 EX28DRAFT_4130 pimelyl-[acyl-carrier protein] methyl ester esterase low > 76
Dickeya dadantii 3937 0.44 DDA3937_RS19775 gluconate transporter 0.18 DDA3937_RS19645 pimeloyl-ACP methyl ester esterase BioH low > 74
Serratia liquefaciens MT49 0.44 IAI46_23960 gluconate transporter 0.19 IAI46_23825 pimeloyl-ACP methyl ester esterase BioH low > 86
Escherichia coli BW25113 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.19 b3412 bioH carboxylesterase of pimeloyl-CoA synthesis (NCBI) low > 76
Escherichia coli ECRC101 0.44 MCAODC_07515 gntT gluconate transporter 0.19 MCAODC_07530 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli ECRC102 0.44 NIAGMN_14755 gntT gluconate transporter 0.19 NIAGMN_14770 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli ECOR27 0.44 NOLOHH_08770 gntT gluconate transporter 0.19 NOLOHH_08785 bioH pimeloyl-ACP methyl ester esterase BioH low > 57
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19505 gluconate transporter 0.20 ECOLIN_RS19490 pimeloyl-ACP methyl ester esterase BioH low > 52
Escherichia coli ECOR38 0.44 HEPCGN_15795 gntT gluconate transporter 0.19 HEPCGN_15810 bioH pimeloyl-ACP methyl ester esterase BioH low > 85
Escherichia coli ECRC101 0.44 OKFHMN_16985 gntT gluconate transporter 0.19 OKFHMN_17000 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli BL21 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system 0.19 ECD_03264 pimeloyl-ACP methyl ester carboxylesterase low > 60
Escherichia fergusonii Becca 0.44 EFB2_00413 High-affinity gluconate transporter 0.20 EFB2_00416 Pimeloyl-[acyl-carrier protein] methyl ester esterase low > 86
Escherichia coli ECRC62 0.44 BNILDI_02745 gntT gluconate transporter 0.19 BNILDI_02730 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli ECRC99 0.44 KEDOAH_11155 gntT gluconate transporter 0.19 KEDOAH_11140 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli ECRC98 0.44 JDDGAC_20615 gntT gluconate transporter 0.19 JDDGAC_20630 bioH pimeloyl-ACP methyl ester esterase BioH — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00288 High-affinity gluconate transporter 0.19 OHPLBJKB_00291 Pimeloyl-[acyl-carrier protein] methyl ester esterase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF602 High-affinity gluconate transporter GntT 0.19 GFF605 Biotin synthesis protein BioH low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) 0.19 BWI76_RS26630 pimeloyl-[acyl-carrier protein] methyl ester esterase low > 92
Rahnella sp. WP5 0.42 EX31_RS05050 gluconate transporter 0.20 EX31_RS04915 pimeloyl-ACP methyl ester esterase BioH low > 89
Alteromonas macleodii MIT1002 0.38 MIT1002_03473 5-keto-D-gluconate transporter 0.21 MIT1002_04016 Pimelyl-[acyl-carrier protein] methyl ester esterase low > 70
Erwinia tracheiphila SCR3 0.35 LU632_RS19170 gntU gluconate transporter 0.19 LU632_RS22975 bioH pimeloyl-ACP methyl ester esterase BioH — —
Pectobacterium carotovorum WPP14 0.28 HER17_RS00545 GntP family transporter 0.17 HER17_RS01555 pimeloyl-ACP methyl ester esterase BioH low > 75
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_01470 permease 0.23 CSW01_13715 pimeloyl-[acyl-carrier protein] methyl ester esterase low > 62
Shewanella loihica PV-4 0.23 Shew_2533 gluconate transporter (RefSeq) 0.20 Shew_3630 bioH protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.22 SO1771 permease, GntP family (NCBI ptt file) 0.18 SO4626 bioH bioH protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.21 Shewana3_2684 gluconate transporter (RefSeq) 0.20 Shewana3_4010 bioH protein (RefSeq) — —

Not shown: 19 genomes with orthologs for PP_3417 only; 8 genomes with orthologs for PP_0364 only