Conservation of cofitness between PP_5338 and PP_0214 in Pseudomonas putida KT2440

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5338 aspartate ammonia-lyase 1.0 PP_0214 4-aminobutyrate aminotransferase 0.38 7
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) 0.87 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_11090 aspartate ammonia-lyase 0.86 AO356_10715 4-aminobutyrate aminotransferase low > 104
Pseudomonas sp. RS175 0.93 PFR28_04498 Aspartate ammonia-lyase 0.86 PFR28_04756 5-aminovalerate aminotransferase DavT 0.31 7
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.86 Pf1N1B4_1733 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) — —
Pseudomonas simiae WCS417 0.93 PS417_28130 aspartate ammonia-lyase 0.85 PS417_00900 4-aminobutyrate aminotransferase — —
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_09950 aspartate ammonia-lyase 0.86 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.85 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.85 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase low > 109
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.86 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_5051 Aspartate ammonia-lyase 0.83 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_5051 Aspartate ammonia-lyase 0.83 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme low > 86
Pseudomonas sp. S08-1 0.88 OH686_13315 Aspartate ammonia-lyase 0.79 OH686_11880 4-aminobutyrate transaminase — —
Pseudomonas stutzeri RCH2 0.84 Psest_4074 Aspartate ammonia-lyase 0.84 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS26135 aspartate ammonia-lyase 0.59 RR42_RS26240 4-aminobutyrate aminotransferase low > 128
Shewanella amazonensis SB2B 0.58 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.70 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_03594 Aspartate ammonia-lyase 0.58 MPMX19_04919 5-aminovalerate aminotransferase DavT low > 112
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS33820 aspartate ammonia-lyase 0.56 QEN71_RS19980 4-aminobutyrate--2-oxoglutarate transaminase low > 153
Agrobacterium fabrum C58 0.53 Atu3793 aspartate ammonia-lyase 0.23 Atu5302 aminotransferase, class III — —
Rahnella sp. WP5 0.53 EX31_RS08965 aspartate ammonia-lyase 0.50 EX31_RS00095 4-aminobutyrate--2-oxoglutarate transaminase low > 89
Variovorax sp. SCN45 0.52 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.55 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 127
Escherichia coli ECRC101 0.52 OKFHMN_12430 aspA aspartate ammonia-lyase 0.75 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli BW25113 0.52 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.75 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) low > 76
Escherichia coli ECRC98 0.52 JDDGAC_16065 aspA aspartate ammonia-lyase 0.75 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC99 0.52 KEDOAH_15735 aspA aspartate ammonia-lyase 0.75 KEDOAH_07230 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECRC101 0.52 MCAODC_02940 aspA aspartate ammonia-lyase 0.75 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03904 Aspartate ammonia-lyase 0.75 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT low > 73
Escherichia coli ECRC102 0.52 NIAGMN_10275 aspA aspartate ammonia-lyase 0.75 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Escherichia coli ECOR38 0.52 HEPCGN_10655 aspA aspartate ammonia-lyase 0.74 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 85
Escherichia coli Nissle 1917 0.52 ECOLIN_RS24045 aspartate ammonia-lyase 0.75 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase low > 52
Escherichia coli ECOR27 0.52 NOLOHH_04695 aspA aspartate ammonia-lyase 0.75 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase low > 57
Escherichia fergusonii Becca 0.52 EFB2_04396 Aspartate ammonia-lyase 0.75 EFB2_01268 4-aminobutyrate aminotransferase GabT low > 86
Escherichia coli BL21 0.52 ECD_04009 aspartate ammonia-lyase 0.75 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent low > 60
Escherichia coli ECRC62 0.52 BNILDI_06795 aspA aspartate ammonia-lyase 0.74 BNILDI_11295 gabT 4-aminobutyrate--2-oxoglutarate transaminase — —
Variovorax sp. OAS795 0.52 ABID97_RS05930 aspartate ammonia-lyase 0.69 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase low > 91
Serratia liquefaciens MT49 0.52 IAI46_01480 aspartate ammonia-lyase 0.54 IAI46_22165 4-aminobutyrate--2-oxoglutarate transaminase low > 86
Pectobacterium carotovorum WPP14 0.52 HER17_RS18835 aspartate ammonia-lyase 0.53 HER17_RS09880 4-aminobutyrate--2-oxoglutarate transaminase 0.56 17
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3336 aspartate ammonia-lyase 0.54 EX28DRAFT_1503 4-aminobutyrate aminotransferase, prokaryotic type low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.73 GFF1567 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) low > 78
Enterobacter sp. TBS_079 0.52 MPMX20_00419 Aspartate ammonia-lyase 0.53 MPMX20_04337 4-aminobutyrate aminotransferase PuuE low > 85
Klebsiella michiganensis M5al 0.52 BWI76_RS02330 aspartate ammonia-lyase 0.55 BWI76_RS26375 aspartate aminotransferase family protein low > 92
Dickeya dianthicola ME23 0.51 DZA65_RS02850 aspartate ammonia-lyase 0.52 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS02695 aspartate ammonia-lyase 0.52 HGI48_RS11860 4-aminobutyrate--2-oxoglutarate transaminase low > 71
Pantoea sp. MT58 0.51 IAI47_17320 aspartate ammonia-lyase 0.53 IAI47_19475 4-aminobutyrate--2-oxoglutarate transaminase low > 76
Acinetobacter radioresistens SK82 0.51 MPMX26_01469 Aspartate ammonia-lyase 0.54 MPMX26_01998 4-aminobutyrate aminotransferase PuuE low > 36
Dickeya dadantii 3937 0.51 DDA3937_RS02720 aspartate ammonia-lyase 0.51 DDA3937_RS11830 4-aminobutyrate--2-oxoglutarate transaminase low > 74
Castellaniella sp019104865 MT123 0.46 ABCV34_RS07730 aspartate ammonia-lyase 0.51 ABCV34_RS01765 4-aminobutyrate--2-oxoglutarate transaminase low > 48

Not shown: 11 genomes with orthologs for PP_5338 only; 23 genomes with orthologs for PP_0214 only