Conservation of cofitness between PFLU_RS15475 and PFLU_RS00395 in Pseudomonas fluorescens SBW25

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS15475 TetR/AcrR family transcriptional regulator 1.0 PFLU_RS00395 DNA polymerase I 0.66 19
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS15475 TetR/AcrR family transcriptional regulator 1.00 PFLU_RS00395 DNA polymerase I low > 109
Variovorax sp. OAS795 0.59 ABID97_RS26150 TetR/AcrR family transcriptional regulator 0.45 ABID97_RS09180 DNA polymerase I low > 91
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3383 transcriptional regulator, TetR family 0.34 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Serratia liquefaciens MT49 0.32 IAI46_07070 TetR/AcrR family transcriptional regulator 0.59 IAI46_24985 DNA polymerase I low > 86
Azospirillum brasilense Sp245 0.31 AZOBR_RS02040 TetR family transcriptional regulator 0.36 AZOBR_RS30685 DNA polymerase low > 97
Dickeya dianthicola 67-19 0.31 HGI48_RS05310 TetR/AcrR family transcriptional regulator 0.58 HGI48_RS21260 DNA polymerase I — —
Shewanella sp. ANA-3 0.30 Shewana3_1076 TetR family transcriptional regulator (RefSeq) 0.57 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.30 SO3494 transcriptional regulator, TetR family (NCBI ptt file) 0.57 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Enterobacter sp. TBS_079 0.29 MPMX20_01792 HTH-type transcriptional repressor ComR 0.56 MPMX20_04601 DNA polymerase I low > 85
Escherichia coli BW25113 0.28 b1111 ycfQ orf, hypothetical protein (VIMSS) 0.58 b3863 polA DNA polymerase I (NCBI) low > 76
Agrobacterium fabrum C58 0.28 Atu3075 TetR family transcriptional regulator 0.38 Atu0110 DNA polymerase I — —
Escherichia coli ECRC62 0.28 BNILDI_19175 comR TetR family copper-responsive transcriptional repressor ComR 0.57 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_02555 HTH-type transcriptional repressor ComR 0.57 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS06410 TetR family copper-responsive transcriptional repressor ComR 0.57 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECOR27 0.28 NOLOHH_21010 comR TetR family copper-responsive transcriptional repressor ComR 0.58 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BL21 0.28 ECD_01107 repressor for bhsA(ycfR) 0.58 ECD_03749 5 — —
Escherichia coli ECRC102 0.28 NIAGMN_24345 comR TetR family copper-responsive transcriptional repressor ComR 0.57 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC99 0.28 KEDOAH_24270 comR TetR family copper-responsive transcriptional repressor ComR 0.57 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.28 MCAODC_22845 comR TetR family copper-responsive transcriptional repressor ComR 0.57 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECOR38 0.28 HEPCGN_24000 comR TetR family copper-responsive transcriptional repressor ComR 0.57 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC98 0.28 JDDGAC_07145 comR TetR family copper-responsive transcriptional repressor ComR 0.57 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC100 0.28 OKFHMN_03485 comR TetR family copper-responsive transcriptional repressor ComR 0.57 OKFHMN_14150 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.27 EFB2_02864 HTH-type transcriptional repressor ComR 0.57 EFB2_04753 DNA polymerase I — —
Pantoea sp. MT58 0.27 IAI47_09720 TetR/AcrR family transcriptional regulator 0.57 IAI47_00430 DNA polymerase I low > 76
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1819 transcriptional regulator, TetR family 0.57 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_01426 transcriptional regulator, TetR family 0.48 H281DRAFT_06022 DNA polymerase I low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF3394 putative transcriptional repressor 0.56 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Klebsiella michiganensis M5al 0.26 BWI76_RS11190 putative TetR/AcrR family transcriptional regulatory protein 0.57 BWI76_RS00355 DNA polymerase I low > 92
Rahnella sp. WP5 0.26 EX31_RS23895 TetR/AcrR family transcriptional regulator 0.58 EX31_RS15905 DNA polymerase I low > 89
Paraburkholderia graminis OAS925 0.24 ABIE53_002226 AcrR family transcriptional regulator 0.48 ABIE53_004852 DNA polymerase-1 low > 113
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS36215 TetR/AcrR family transcriptional regulator 0.50 QEN71_RS17885 DNA polymerase I — —
Rhizobium sp. OAE497 0.24 ABIE40_RS21315 TetR/AcrR family transcriptional regulator 0.36 ABIE40_RS00490 DNA polymerase I low > 107
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_28110 TetR family transcriptional regulator 0.85 AO353_10930 DNA polymerase I low > 101
Bosea sp. OAE506 0.20 ABIE41_RS18905 TetR/AcrR family transcriptional regulator 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Dinoroseobacter shibae DFL-12 0.17 Dshi_1874 transcriptional regulator, TetR family (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Shewanella loihica PV-4 0.16 Shew_2729 TetR family transcriptional regulator (RefSeq) 0.57 Shew_3714 DNA polymerase I (RefSeq) — —
Dickeya dianthicola ME23 0.15 DZA65_RS22680 TetR/AcrR family transcriptional regulator 0.58 DZA65_RS22235 DNA polymerase I — —

Not shown: 2 genomes with orthologs for PFLU_RS15475 only; 57 genomes with orthologs for PFLU_RS00395 only