Conservation of cofitness between JDDGAC_28305 and JDDGAC_07260 in Escherichia coli ECRC98

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_28305 mdtB multidrug efflux RND transporter permease subunit MdtB 1.0 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 0.71 11
Escherichia coli ECRC102 1.00 NIAGMN_22140 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC99 1.00 KEDOAH_03955 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC100 1.00 OKFHMN_24195 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD low > 80
Escherichia coli ECRC101 1.00 MCAODC_20745 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 MCAODC_22960 yceD 23S rRNA accumulation protein YceD low > 87
Escherichia coli ECOR27 1.00 NOLOHH_15540 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD low > 75
Escherichia coli BW25113 1.00 b2075 mdtB multidrug efflux system, subunit B (NCBI) 1.00 b1088 yceD hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12200 multidrug efflux RND transporter permease subunit MdtB 1.00 ECOLIN_RS06290 23S rRNA accumulation protein YceD low > 55
Escherichia fergusonii Becca 1.00 EFB2_01780 Multidrug resistance protein MdtB 1.00 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01629 Multidrug resistance protein MdtB 0.99 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD low > 73
Escherichia coli ECRC62 1.00 BNILDI_14455 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 BNILDI_19290 yceD 23S rRNA accumulation protein YceD low > 75
Escherichia coli ECOR38 1.00 HEPCGN_02885 mdtB multidrug efflux RND transporter permease subunit MdtB 1.00 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD low > 87
Escherichia coli BL21 1.00 ECD_01980 multidrug efflux system, subunit B 1.00 ECD_01084 DUF177 family protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3854 Multidrug transporter MdtB 0.97 GFF3370 COG1399 protein, clustered with ribosomal protein L32p low > 78
Klebsiella michiganensis M5al 0.91 BWI76_RS19255 multidrug transporter subunit MdtB 0.87 BWI76_RS11065 hypothetical protein — —
Enterobacter sp. TBS_079 0.90 MPMX20_03061 Multidrug resistance protein MdtB 0.94 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0483 Cation/multidrug efflux pump 0.94 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein low > 76
Serratia liquefaciens MT49 0.81 IAI46_18975 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.73 IAI46_09765 23S rRNA accumulation protein YceD — —
Pantoea sp. MT58 0.81 IAI47_06870 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.79 IAI47_12095 23S rRNA accumulation protein YceD — —
Erwinia tracheiphila SCR3 0.80 LU632_RS08690 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.84 LU632_RS14845 yceD 23S rRNA accumulation protein YceD low > 74
Pectobacterium carotovorum WPP14 0.79 HER17_RS06320 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.84 HER17_RS08625 23S rRNA accumulation protein YceD low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS15265 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.84 DDA3937_RS13145 23S rRNA accumulation protein YceD low > 74
Dickeya dianthicola ME23 0.77 DZA65_RS16165 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.83 DZA65_RS13680 23S rRNA accumulation protein YceD — —
Dickeya dianthicola 67-19 0.76 HGI48_RS15345 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.82 HGI48_RS13210 23S rRNA accumulation protein YceD low > 71
Herbaspirillum seropedicae SmR1 0.68 HSERO_RS07650 multidrug transporter 0.15 HSERO_RS09580 DNA-binding protein — —
Pseudomonas sp. RS175 0.63 PFR28_02194 Multidrug resistance protein MdtB 0.22 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_25875 multidrug transporter 0.16 AO356_20145 metal-binding protein — —
Rahnella sp. WP5 0.62 EX31_RS13380 MMPL family transporter 0.85 EX31_RS24410 23S rRNA accumulation protein YceD low > 89
Pseudomonas putida KT2440 0.62 PP_3584 multidrug efflux transport system - membrane subunit 0.19 PP_1910 conserved protein of unknown function — —
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_1272 Acriflavin resistance plasma membrane protein 0.16 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_3266 Acriflavin resistance plasma membrane protein 0.17 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_22895 multidrug transporter 0.17 AO353_01385 metal-binding protein — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS13430 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.18 PFLU_RS23075 hypothetical protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS13430 MdtB/MuxB family multidrug efflux RND transporter permease subunit 0.18 PFLU_RS23075 hypothetical protein — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4665 Acriflavin resistance plasma membrane protein 0.17 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas simiae WCS417 0.61 PS417_12745 multidrug transporter 0.17 PS417_21460 metal-binding protein — —
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_2483 Acriflavin resistance protein 0.16 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_2483 Acriflavin resistance protein 0.16 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas stutzeri RCH2 0.59 Psest_2139 Cation/multidrug efflux pump 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein — —
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16320 efflux RND transporter permease subunit 0.18 ABZR86_RS06190 YceD family protein low > 74
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_16105 acrB Multidrug efflux pump subunit AcrB 0.15 OKGIIK_05695 Large ribosomal RNA subunit accumulation protein YceD low > 52
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.4792.1 Acriflavin resistance protein 0.20 Xcc-8004.4000.1 COG1399 protein, clustered with ribosomal protein L32p low > 74

Not shown: 24 genomes with orthologs for JDDGAC_28305 only; 10 genomes with orthologs for JDDGAC_07260 only