Conservation of cofitness between IAI47_16965 and IAI47_16055 in Pantoea sp. MT58

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_16965 U32 family peptidase 1.0 IAI47_16055 RNA polymerase-associated protein RapA 0.41 2
Escherichia coli Nissle 1917 0.83 ECOLIN_RS18140 peptidase U32 family protein 0.84 ECOLIN_RS00315 RNA polymerase-associated protein RapA low > 52
Escherichia coli BW25113 0.83 b3158 yhbU predicted peptidase (collagenase-like) (NCBI) 0.84 b0059 hepA ATP-dependent helicase HepA (NCBI) low > 76
Escherichia coli ECOR27 0.83 NOLOHH_09975 ubiU Ubiquinone biosynthesis protein UbiU 0.84 NOLOHH_03145 rapA RNA polymerase-associated protein RapA low > 57
Escherichia coli ECOR38 0.83 HEPCGN_17050 protease 0.84 HEPCGN_08790 rapA RNA polymerase-associated protein RapA low > 85
Escherichia coli ECRC99 0.83 KEDOAH_09975 protease 0.84 KEDOAH_17355 rapA RNA polymerase-associated protein RapA — —
Escherichia coli BL21 0.83 ECD_03025 U32 peptidase family protein 0.84 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase 0.50 46
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_00542 putative protease YhbU 0.84 OHPLBJKB_03599 RNA polymerase-associated protein RapA low > 73
Escherichia coli ECRC98 0.83 JDDGAC_21800 protease 0.84 JDDGAC_14395 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECRC62 0.83 BNILDI_01555 ubiU Ubiquinone biosynthesis protein UbiU 0.84 BNILDI_08460 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECRC101 0.83 MCAODC_08695 protease 0.84 MCAODC_01315 rapA RNA polymerase-associated protein RapA — —
Klebsiella michiganensis M5al 0.83 BWI76_RS24970 peptidase U32 0.85 BWI76_RS04570 RNA polymerase-associated protein RapA low > 92
Escherichia coli ECRC101 0.83 OKFHMN_18175 protease 0.84 OKFHMN_10800 rapA RNA polymerase-associated protein RapA — —
Escherichia fergusonii Becca 0.83 EFB2_00665 putative protease YhbU 0.84 EFB2_03986 RNA polymerase-associated protein RapA low > 86
Escherichia coli ECRC102 0.83 NIAGMN_15935 ubiU Ubiquinone biosynthesis protein UbiU 0.84 NIAGMN_08650 rapA RNA polymerase-associated protein RapA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1510 FIG139552: Putative protease 0.85 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 78
Pectobacterium carotovorum WPP14 0.82 HER17_RS18160 U32 family peptidase 0.79 HER17_RS02990 RNA polymerase-associated protein RapA 0.59 53
Rahnella sp. WP5 0.80 EX31_RS08480 U32 family peptidase 0.81 EX31_RS03745 RNA polymerase-associated protein RapA low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS03290 U32 family peptidase 0.78 HGI48_RS18170 RNA polymerase-associated protein RapA low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS03285 U32 family peptidase 0.78 DZA65_RS19310 RNA polymerase-associated protein RapA low > 75
Dickeya dadantii 3937 0.80 DDA3937_RS03115 U32 family peptidase 0.78 DDA3937_RS18235 RNA polymerase-associated protein RapA low > 74
Enterobacter sp. TBS_079 0.79 MPMX20_04062 putative protease YhbU 0.85 MPMX20_00753 RNA polymerase-associated protein RapA low > 85
Enterobacter asburiae PDN3 0.79 EX28DRAFT_3207 Collagenase and related proteases 0.86 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family low > 76
Erwinia tracheiphila SCR3 0.79 LU632_RS21005 U32 family peptidase 0.87 LU632_RS02805 rapA RNA polymerase-associated protein RapA low > 74
Serratia liquefaciens MT49 0.78 IAI46_02015 U32 family peptidase 0.84 IAI46_03275 RNA polymerase-associated protein RapA low > 86
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_03435 protease 0.64 CSW01_12705 RNA polymerase-associated protein RapA low > 62
Pseudomonas stutzeri RCH2 0.65 Psest_0835 Collagenase and related proteases 0.47 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family low > 67
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_22050 protease 0.47 AO353_17155 RNA polymerase-associated protein RapA low > 101
Pseudomonas sp. RS175 0.64 PFR28_02214 putative protease YhbU 0.48 PFR28_00612 RNA polymerase-associated protein RapA low > 88
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_5746 FIG139552: Putative protease 0.47 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_25160 protease 0.47 AO356_04975 RNA polymerase-associated protein RapA low > 104
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_721 FIG139552: Putative protease 0.47 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 103
Pseudomonas simiae WCS417 0.63 PS417_15755 protease 0.46 PS417_06645 RNA polymerase-associated protein RapA low > 88
Shewanella sp. ANA-3 0.61 Shewana3_1065 peptidase U32 (RefSeq) 0.58 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO1249 peptidase, U32 family (NCBI ptt file) 0.58 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.60 Shew_2787 peptidase U32 (RefSeq) 0.57 Shew_0457 ATP-dependent helicase HepA (RefSeq) low > 60
Shewanella amazonensis SB2B 0.60 Sama_0998 U32 family peptidase (RefSeq) 0.58 Sama_3131 ATP-dependent helicase HepA (RefSeq) low > 62

Not shown: 16 genomes with orthologs for IAI47_16965 only; 14 genomes with orthologs for IAI47_16055 only