Conservation of cofitness between IAI47_11310 and IAI47_04835 in Pantoea sp. MT58

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_11310 redox-regulated ATPase YchF 1.0 IAI47_04835 ATP-dependent RNA helicase SrmB 0.50 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.78 GFF2104 ATP-dependent RNA helicase SrmB low > 78
Dickeya dianthicola ME23 0.94 DZA65_RS11435 redox-regulated ATPase YchF 0.79 DZA65_RS16945 ATP-dependent RNA helicase SrmB low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS10975 redox-regulated ATPase YchF 0.79 HGI48_RS15865 ATP-dependent RNA helicase SrmB 0.64 15
Dickeya dadantii 3937 0.94 DDA3937_RS11035 redox-regulated ATPase YchF 0.80 DDA3937_RS15780 ATP-dependent RNA helicase SrmB 0.66 1
Erwinia tracheiphila SCR3 0.94 LU632_RS13950 ychF redox-regulated ATPase YchF 0.83 LU632_RS15440 srmB ATP-dependent RNA helicase SrmB low > 74
Escherichia coli ECRC99 0.93 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.79 KEDOAH_06860 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC102 0.93 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.79 NIAGMN_19130 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC101 0.93 MCAODC_21850 ychF redox-regulated ATPase YchF 0.79 MCAODC_11890 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECOR27 0.93 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.79 NOLOHH_13035 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli BW25113 0.93 b1203 ychF translation-associated GTPase (NCBI) 0.79 b2576 srmB ATP-dependent RNA helicase (NCBI) — —
Escherichia coli ECRC101 0.93 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.79 OKFHMN_21360 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli ECRC98 0.93 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.79 JDDGAC_25025 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.79 OHPLBJKB_01131 ATP-dependent RNA helicase SrmB low > 73
Escherichia coli ECOR38 0.93 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.79 HEPCGN_20505 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli Nissle 1917 0.93 ECOLIN_RS07280 redox-regulated ATPase YchF 0.79 ECOLIN_RS14580 ATP-dependent RNA helicase SrmB — —
Escherichia fergusonii Becca 0.93 EFB2_02724 Ribosome-binding ATPase YchF 0.79 EFB2_01320 ATP-dependent RNA helicase SrmB low > 86
Escherichia coli BL21 0.93 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.79 ECD_02470 ATP-dependent RNA helicase — —
Escherichia coli ECRC62 0.93 BNILDI_18805 ychF redox-regulated ATPase YchF 0.80 BNILDI_11835 srmB ATP-dependent RNA helicase SrmB — —
Pectobacterium carotovorum WPP14 0.93 HER17_RS10445 redox-regulated ATPase YchF 0.83 HER17_RS05765 ATP-dependent RNA helicase SrmB low > 75
Serratia liquefaciens MT49 0.91 IAI46_10240 redox-regulated ATPase YchF 0.82 IAI46_19600 ATP-dependent RNA helicase SrmB — —
Rahnella sp. WP5 0.90 EX31_RS07380 redox-regulated ATPase YchF 0.81 EX31_RS21785 ATP-dependent RNA helicase SrmB 0.54 3
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0821 GTP-binding protein YchF 0.79 EX28DRAFT_0069 Superfamily II DNA and RNA helicases — —
Enterobacter sp. TBS_079 0.89 MPMX20_02645 Ribosome-binding ATPase YchF 0.80 MPMX20_03447 ATP-dependent RNA helicase SrmB low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS17485 GTP-binding protein YchF 0.80 BWI76_RS21370 ATP-dependent RNA helicase SrmB — —
Alteromonas macleodii MIT1002 0.81 MIT1002_01504 Ribosome-binding ATPase YchF 0.51 MIT1002_00941 ATP-dependent RNA helicase SrmB — —
Shewanella oneidensis MR-1 0.80 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.49 SO0947 srmB ATP-dependent RNA helicase SrmB (NCBI ptt file) 0.44 8
Shewanella sp. ANA-3 0.80 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.49 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) 0.48 59
Shewanella loihica PV-4 0.78 Shew_2919 translation-associated GTPase (RefSeq) 0.48 Shew_0767 ATP-dependent RNA helicase SrmB (RefSeq) 0.56 13
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_10875 redox-regulated ATPase YchF 0.55 CSW01_03475 ATP-dependent RNA helicase SrmB low > 62
Pseudomonas sp. S08-1 0.73 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.32 OH686_05415 ATP-dependent RNA helicase SrmB low > 80
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2052 GTP-binding protein YchF 0.31 B158DRAFT_1312 Superfamily II DNA and RNA helicases low > 40
Pseudomonas putida KT2440 0.73 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.32 PP_4532 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis low > 96
Pseudomonas sp. RS175 0.72 PFR28_03664 Ribosome-binding ATPase YchF 0.33 PFR28_00756 ATP-dependent RNA helicase RhlE low > 88
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_14740 GTP-binding protein 0.32 AO353_18305 RNA helicase low > 101
Pseudomonas stutzeri RCH2 0.72 Psest_1103 GTP-binding protein YchF 0.32 Psest_1627 Superfamily II DNA and RNA helicases low > 67
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.32 PfGW456L13_4451 ATP-dependent RNA helicase SrmB 0.45 46
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.32 Pf1N1B4_543 ATP-dependent RNA helicase SrmB — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_16450 GTP-binding protein 0.32 AO356_04210 RNA helicase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_0941 Conserved hypothetical protein 92 0.32 Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_0941 Conserved hypothetical protein 92 0.32 Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal low > 86
Pseudomonas simiae WCS417 0.71 PS417_03560 GTP-binding protein 0.32 PS417_20275 RNA helicase — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.32 PFLU_RS22195 DEAD/DEAH box helicase low > 109
Pseudomonas fluorescens SBW25 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.32 PFLU_RS22195 DEAD/DEAH box helicase low > 109
Azospirillum sp. SherDot2 0.57 MPMX19_01641 Ribosome-binding ATPase YchF 0.35 MPMX19_06125 RNA helicase CrhR — —

Not shown: 56 genomes with orthologs for IAI47_11310 only; 1 genomes with orthologs for IAI47_04835 only