Conservation of cofitness between IAI46_21835 and IAI46_24205 in Serratia liquefaciens MT49

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_21835 YgiQ family radical SAM protein 1.0 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.42 19
Klebsiella michiganensis M5al 0.86 BWI76_RS24310 YgiQ family radical SAM protein 0.72 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 92
Enterobacter sp. TBS_079 0.85 MPMX20_03857 hypothetical protein 0.74 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J low > 85
Escherichia coli Nissle 1917 0.85 ECOLIN_RS17355 YgiQ family radical SAM protein 0.77 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 52
Escherichia fergusonii Becca 0.85 EFB2_00795 hypothetical protein 0.77 EFB2_00318 Ribosomal RNA small subunit methyltransferase J low > 86
Escherichia coli ECRC62 0.85 BNILDI_00820 ygiQ YgiQ family radical SAM protein 0.76 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00686 hypothetical protein 0.76 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J low > 73
Escherichia coli BW25113 0.85 b4469 ygiQ hypothetical protein (NCBI) 0.76 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.85 NOLOHH_10695 ygiQ YgiQ family radical SAM protein 0.76 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 57
Escherichia coli ECRC101 0.85 OKFHMN_18915 ygiQ YgiQ family radical SAM protein 0.76 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECRC101 0.85 MCAODC_09430 ygiQ YgiQ family radical SAM protein 0.76 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECRC99 0.85 KEDOAH_09230 ygiQ YgiQ family radical SAM protein 0.76 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECRC102 0.85 NIAGMN_16680 ygiQ YgiQ family radical SAM protein 0.76 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECRC98 0.85 JDDGAC_22550 ygiQ YgiQ family radical SAM protein 0.76 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli ECOR38 0.85 HEPCGN_17785 ygiQ YgiQ family radical SAM protein 0.76 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 85
Escherichia coli BL21 0.85 ECD_02888 Radical SAM superfamily protein 0.76 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent low > 60
Enterobacter asburiae PDN3 0.84 EX28DRAFT_3051 uncharacterized radical SAM protein YgiQ 0.76 EX28DRAFT_4064 Putative SAM-dependent methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF3129 Probable Fe-S oxidoreductase family 2 0.75 GFF518 rRNA small subunit methyltransferase J low > 78
Rahnella sp. WP5 0.84 EX31_RS04200 YgiQ family radical SAM protein 0.86 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 89
Alteromonas macleodii MIT1002 0.72 MIT1002_01793 ribosomal protein S12 methylthiotransferase 0.39 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J low > 70
Shewanella amazonensis SB2B 0.71 Sama_3349 hypothetical protein (RefSeq) 0.61 Sama_3564 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.71 Shew_0233 hypothetical protein (RefSeq) 0.62 Shew_3647 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.69 Shewana3_3874 hypothetical protein (RefSeq) 0.60 Shewana3_4037 hypothetical protein (RefSeq) low > 73
Pseudomonas sp. S08-1 0.66 OH686_15955 UPF0313 [4Fe-4S] protein YgiQ 0.39 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 80
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_08605 YgiQ family radical SAM protein 0.62 CSW01_00395 ribosomal RNA small subunit methyltransferase J low > 62
Pseudomonas putida KT2440 0.66 PP_4872 putative enzyme of unknown function 0.38 PP_1513 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas stutzeri RCH2 0.65 Psest_0701 uncharacterized radical SAM protein YgiQ 0.39 Psest_1563 Protein of unknown function (DUF548). low > 67
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_137 Fe-S OXIDOREDUCTASE (1.8.-.-) 0.38 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) low > 87
Pseudomonas fluorescens SBW25 0.65 PFLU_RS02660 YgiQ family radical SAM protein 0.37 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS02660 YgiQ family radical SAM protein 0.37 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_13235 YgiQ family radical SAM protein 0.39 AO353_16350 SAM-dependent methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_0587 Radical SAM 0.41 Psyr_1325 Protein of unknown function DUF548 — —
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_08575 YgiQ family radical SAM protein 0.38 AO356_06145 SAM-dependent methyltransferase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_0587 Radical SAM 0.41 Psyr_1325 Protein of unknown function DUF548 low > 86
Pseudomonas simiae WCS417 0.65 PS417_02590 hypothetical protein 0.37 PS417_06100 SAM-dependent methyltransferase low > 88
Pseudomonas sp. RS175 0.64 PFR28_05137 hypothetical protein 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J low > 88
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_3600 Fe-S OXIDOREDUCTASE (1.8.-.-) 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1396 Fe-S OXIDOREDUCTASE (1.8.-.-) 0.38 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) — —

Not shown: 17 genomes with orthologs for IAI46_21835 only; 6 genomes with orthologs for IAI46_24205 only