Conservation of cofitness between HSERO_RS16875 and HSERO_RS23825 in Herbaspirillum seropedicae SmR1

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16875 diguanylate cyclase 1.0 HSERO_RS23825 hypothetical protein 0.33 4
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS14650 diguanylate cyclase 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Pseudomonas sp. S08-1 0.43 OH686_04700 hypothetical protein 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 80
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS21525 hypothetical protein 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Pseudomonas putida KT2440 0.40 PP_1155 YaiC/YhcK/ArdA family protein 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Serratia liquefaciens MT49 0.40 IAI46_05890 diguanylate cyclase 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Pseudomonas simiae WCS417 0.39 PS417_21835 histidine kinase 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 88
Pseudomonas fluorescens SBW25 0.39 PFLU_RS23435 diguanylate cyclase 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS23435 diguanylate cyclase 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 109
Dickeya dadantii 3937 0.36 DDA3937_RS06830 diguanylate cyclase 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_21315 histidine kinase 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01080 histidine kinase 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 104
Pseudomonas stutzeri RCH2 0.34 Psest_1455 diguanylate cyclase (GGDEF) domain 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 67
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4282 Protein YaiC 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 78
Pectobacterium carotovorum WPP14 0.33 HER17_RS14460 diguanylate cyclase AdrA 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_139 Two-component response regulator 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 103
Escherichia coli ECRC102 0.31 NIAGMN_06670 adrA diguanylate cyclase AdrA 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli BW25113 0.31 b0385 yaiC predicted diguanylate cyclase (NCBI) 0.20 b2324 b2324 putative peptidase (VIMSS) low > 76
Escherichia coli ECRC99 0.31 KEDOAH_19350 adrA diguanylate cyclase AdrA 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia fergusonii Becca 0.31 EFB2_03671 putative diguanylate cyclase DgcC 0.20 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 86
Escherichia coli ECOR38 0.31 HEPCGN_07255 adrA diguanylate cyclase AdrA 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli BL21 0.31 ECD_00332 diguanylate cyclase, cellulose regualtor 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03289 putative diguanylate cyclase DgcC 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 73
Escherichia coli ECRC101 0.31 MCAODC_27840 adrA diguanylate cyclase AdrA 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli ECOR27 0.31 NOLOHH_01540 adrA diguanylate cyclase AdrA 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli ECRC100 0.31 OKFHMN_08615 adrA diguanylate cyclase AdrA 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Escherichia coli Nissle 1917 0.31 ECOLIN_RS02340 diguanylate cyclase AdrA 0.20 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 55
Escherichia coli ECRC98 0.31 JDDGAC_12270 adrA diguanylate cyclase AdrA 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_5860 Two-component response regulator 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87
Escherichia coli ECRC62 0.31 BNILDI_22955 adrA diguanylate cyclase AdrA 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3763 GGDEF domain protein 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3763 GGDEF domain protein 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Enterobacter sp. TBS_079 0.28 MPMX20_00975 putative diguanylate cyclase DgcC 0.17 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 85
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3069 Response regulator containing a CheY-like receiver domain and a GGDEF domain 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79
Pantoea sp. MT58 0.27 IAI47_19665 diguanylate cyclase 0.16 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Enterobacter asburiae PDN3 0.26 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 76
Klebsiella michiganensis M5al 0.25 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 92
Rahnella sp. WP5 0.23 EX31_RS22990 diguanylate cyclase 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 89

Not shown: 1 genomes with orthologs for HSERO_RS16875 only; 27 genomes with orthologs for HSERO_RS23825 only