Conservation of cofitness between HSERO_RS23825 and HSERO_RS22665 in Herbaspirillum seropedicae SmR1

27 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS23825 hypothetical protein 1.0 HSERO_RS22665 transcriptional regulator 0.44 20
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.54 ABIE53_005715 two-component system response regulator TctD low > 113
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.56 ABZR87_RS12680 response regulator low > 80
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.57 RR42_RS03290 transcriptional regulator low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.48 GFF1558 Tricarboxylate transport transcriptional regulator TctD low > 78
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.55 Pf1N1B4_3316 Tricarboxylate transport transcriptional regulator TctD low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.55 AO353_17590 transcriptional regulator low > 101
Pseudomonas stutzeri RCH2 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.53 Psest_0204 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain low > 67
Klebsiella michiganensis M5al 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.49 BWI76_RS20030 DNA-binding response regulator low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.55 PfGW456L13_4524 Tricarboxylate transport transcriptional regulator TctD low > 87
Pseudomonas sp. S08-1 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.55 OH686_20005 Tricarboxylate transport transcriptional regulator TctD low > 80
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.54 AO356_04610 transcriptional regulator low > 104
Pseudomonas sp. RS175 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.55 PFR28_00683 Transcriptional regulatory protein tctD low > 88
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.54 Pf6N2E2_2765 Tricarboxylate transport transcriptional regulator TctD low > 103
Serratia liquefaciens MT49 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.50 IAI46_17870 transcriptional regulator TctD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.55 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.55 Psyr_3965 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Enterobacter sp. TBS_079 0.17 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.46 MPMX20_03192 Transcriptional regulatory protein tctD low > 85
Pseudomonas simiae WCS417 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.56 PS417_07085 transcriptional regulator low > 88
Pseudomonas putida KT2440 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.52 PP_1420 Transcriptional regulatory protein tctD low > 96
Dickeya dadantii 3937 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.49 DDA3937_RS14485 transcriptional regulator TctD low > 74
Pantoea sp. MT58 0.16 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.47 IAI47_06215 transcriptional regulator TctD low > 76
Dickeya dianthicola ME23 0.16 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.49 DZA65_RS15390 transcriptional regulator TctD low > 75
Dickeya dianthicola 67-19 0.16 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.49 HGI48_RS14455 transcriptional regulator TctD low > 71
Pseudomonas fluorescens SBW25 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.56 PFLU_RS07160 response regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.56 PFLU_RS07160 response regulator low > 109
Acidovorax sp. GW101-3H11 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.47 Ac3H11_114 Tricarboxylate transport transcriptional regulator TctD low > 79
Variovorax sp. SCN45 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.47 GFF581 Tricarboxylate transport transcriptional regulator TctD low > 127

Not shown: 37 genomes with orthologs for HSERO_RS23825 only; 7 genomes with orthologs for HSERO_RS22665 only