Conservation of cofitness between HSERO_RS22470 and HSERO_RS22455 in Herbaspirillum seropedicae SmR1

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22470 D-xylose ABC transporter permease 1.0 HSERO_RS22455 AraC family transcriptional regulator 0.88 2
Pseudomonas simiae WCS417 0.74 PS417_10930 D-xylose ABC transporter permease 0.64 PS417_10950 AraC family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.72 PFLU_RS11290 sugar ABC transporter permease 0.63 PFLU_RS11310 DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS11290 sugar ABC transporter permease 0.63 PFLU_RS11310 DNA-binding transcriptional regulator low > 109
Pseudomonas sp. RS175 0.71 PFR28_02351 Xylose transport system permease protein XylH 0.64 PFR28_02347 Xylose operon regulatory protein 0.67 1
Pseudomonas fluorescens FW300-N2E2 0.70 Pf6N2E2_1457 Xylose ABC transporter, permease protein XylH 0.64 Pf6N2E2_1453 Xylose activator XylR (AraC family) 0.20 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_2886 xylose ABC transporter membrane protein 0.64 Psyr_2882 transcriptional regulator, AraC family low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_2886 xylose ABC transporter membrane protein 0.64 Psyr_2882 transcriptional regulator, AraC family low > 86
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_28515 sugar ABC transporter permease 0.65 AO356_28495 AraC family transcriptional regulator 0.48 2
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS25860 sugar ABC transporter permease 0.64 QEN71_RS25880 DNA-binding transcriptional regulator 0.92 4
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_03879 xylose ABC transporter membrane protein 0.66 H281DRAFT_03875 transcriptional regulator, AraC family low > 103
Paraburkholderia graminis OAS925 0.64 ABIE53_004932 D-xylose transport system permease protein 0.66 ABIE53_004928 LacI family transcriptional regulator 0.53 1
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS32810 xylose ABC transporter permease 0.65 BPHYT_RS32830 AraC family transcriptional regulator low > 109
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS18230 sugar ABC transporter permease 0.65 ABZR87_RS18215 DNA-binding transcriptional regulator 0.28 58
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14410 sugar ABC transporter permease 0.60 ABZR86_RS14435 DNA-binding transcriptional regulator low > 74
Serratia liquefaciens MT49 0.51 IAI46_00295 sugar ABC transporter permease 0.42 IAI46_00300 DNA-binding transcriptional regulator low > 86
Rahnella sp. WP5 0.50 EX31_RS09750 sugar ABC transporter permease 0.43 EX31_RS09745 XylR family transcriptional regulator 0.36 18
Pectobacterium carotovorum WPP14 0.49 HER17_RS21070 sugar ABC transporter permease 0.44 HER17_RS21065 XylR family transcriptional regulator low > 75
Enterobacter asburiae PDN3 0.49 EX28DRAFT_3833 ABC-type xylose transport system, permease component 0.43 EX28DRAFT_3834 Transcriptional regulators low > 76
Pantoea sp. MT58 0.48 IAI47_00180 sugar ABC transporter permease 0.43 IAI47_00175 XylR family transcriptional regulator low > 76
Dickeya dadantii 3937 0.48 DDA3937_RS20920 sugar ABC transporter permease 0.43 DDA3937_RS20915 DNA-binding transcriptional regulator low > 74
Dickeya dianthicola 67-19 0.48 HGI48_RS00325 sugar ABC transporter permease 0.43 HGI48_RS00330 XylR family transcriptional regulator low > 71
Dickeya dianthicola ME23 0.48 DZA65_RS00325 sugar ABC transporter permease 0.43 DZA65_RS00330 DNA-binding transcriptional regulator low > 75
Enterobacter sp. TBS_079 0.48 MPMX20_00162 Xylose transport system permease protein XylH 0.42 MPMX20_00161 Xylose operon regulatory protein 0.47 3
Klebsiella michiganensis M5al 0.47 BWI76_RS27040 xylose ABC transporter permease 0.42 BWI76_RS27045 XylR family transcriptional regulator low > 92
Escherichia coli ECRC102 0.46 NIAGMN_13700 xylH xylose ABC transporter permease XylH 0.42 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli BW25113 0.46 b3568 xylH D-xylose transporter subunit (NCBI) 0.42 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) low > 76
Escherichia coli ECRC62 0.46 BNILDI_03660 xylH xylose ABC transporter permease XylH 0.42 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR low > 75
Escherichia coli ECRC101 0.46 MCAODC_06455 xylH xylose ABC transporter permease XylH 0.42 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR low > 87
Escherichia coli BL21 0.46 ECD_03420 D-xylose ABC transporter permease 0.42 ECD_03421 xylose divergent operon transcriptional activator low > 61
Escherichia coli ECOR38 0.46 HEPCGN_14825 xylH xylose ABC transporter permease XylH 0.42 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR low > 87
Escherichia coli ECOR27 0.46 NOLOHH_07885 xylH xylose ABC transporter permease XylH 0.42 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR low > 75
Escherichia fergusonii Becca 0.46 EFB2_00239 Xylose transport system permease protein XylH 0.42 EFB2_00238 Xylose operon regulatory protein low > 86
Escherichia coli Nissle 1917 0.46 ECOLIN_RS20405 xylose ABC transporter permease XylH 0.42 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR low > 55
Escherichia coli ECRC99 0.46 KEDOAH_12210 xylH xylose ABC transporter permease XylH 0.42 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_00136 Xylose transport system permease protein XylH 0.42 OHPLBJKB_00135 Xylose operon regulatory protein low > 73
Escherichia coli ECRC98 0.46 JDDGAC_19570 xylH xylose ABC transporter permease XylH 0.42 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR low > 86
Escherichia coli ECRC100 0.46 OKFHMN_15940 xylH xylose ABC transporter permease XylH 0.42 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR low > 80

Not shown: 4 genomes with orthologs for HSERO_RS22470 only; 4 genomes with orthologs for HSERO_RS22455 only