Conservation of cofitness between HSERO_RS08590 and HSERO_RS16765 in Herbaspirillum seropedicae SmR1

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS16765 LysR family transcriptional regulator 0.32 10
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.64 QEN71_RS21560 LysR family transcriptional regulator low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.66 ABIE53_004463 LysR family transcriptional regulator of beta-lactamase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.66 H281DRAFT_03788 transcriptional regulator, LysR family low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.66 BPHYT_RS19955 LysR family transcriptional regulator low > 109
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.30 GFF1355 Transcriptional regulator, LysR family low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.67 GFF1943 Glycine cleavage system transcriptional activator — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.32 CCNA_01174 LysR-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.32 CCNA_01174 LysR-family transcriptional regulator low > 66
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS15935 rRNA pseudouridine synthase 0.30 LRK54_RS06630 transcriptional regulator GcvA low > 59
Rhodanobacter denitrificans MT42 0.27 LRK55_RS15690 pseudouridine synthase 0.30 LRK55_RS06375 transcriptional regulator GcvA low > 63
Pectobacterium carotovorum WPP14 0.26 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.34 HER17_RS16415 transcriptional regulator GcvA low > 75
Dickeya dianthicola ME23 0.26 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.33 DZA65_RS05390 transcriptional regulator GcvA low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.33 HGI48_RS05050 transcriptional regulator GcvA low > 71
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.59 IAI46_11610 LysR family transcriptional regulator low > 86
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.53 MPMX20_00433 HTH-type transcriptional activator AmpR low > 85
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4611.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.53 Xcc-8004.1418.1 Glycine cleavage system transcriptional activator — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.53 EX28DRAFT_3351 Transcriptional regulator low > 76
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase 0.32 ABZR86_RS17345 transcriptional regulator GcvA low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS11350 pseudouridine synthase 0.34 A4249_RS09680 transcriptional regulator GcvA low > 48
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.65 ABIE40_RS05755 LysR family transcriptional regulator low > 107
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.64 Pf1N1B4_72 Transcriptional regulator, LysR family low > 87
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.33 AO356_15125 LysR family transcriptional regulator low > 104
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.30 Psest_2739 Transcriptional regulator low > 67
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.34 Pf6N2E2_1560 Glycine cleavage system transcriptional activator GcvA low > 103
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.33 PP_0661 putative Transcriptional regulator AmpR low > 96
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.61 PS417_14890 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.61 PFLU_RS16910 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.61 PFLU_RS16910 LysR family transcriptional regulator low > 109

Not shown: 43 genomes with orthologs for HSERO_RS08590 only; 10 genomes with orthologs for HSERO_RS16765 only