Conservation of cofitness between HSERO_RS04345 and HSERO_RS16680 in Herbaspirillum seropedicae SmR1

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04345 membrane protein 1.0 HSERO_RS16680 GntR family transcriptional regulator 0.28 9
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14990 membrane protein 0.58 RR42_RS18580 GntR family transcriptional regulator low > 128
Variovorax sp. SCN45 0.57 GFF4713 Uncharacterized protein YhiN 0.42 GFF4618 Hexuronate utilization operon transcriptional repressor ExuR low > 127
Variovorax sp. OAS795 0.55 ABID97_RS20650 NAD(P)/FAD-dependent oxidoreductase 0.42 ABID97_RS05820 FadR/GntR family transcriptional regulator low > 91
Sinorhizobium meliloti 1021 0.54 SMc00763 hypothetical protein 0.33 SM_b20441 transcriptional regulator low > 103
Rhizobium sp. OAE497 0.51 ABIE40_RS03215 NAD(P)/FAD-dependent oxidoreductase 0.36 ABIE40_RS25825 FadR/GntR family transcriptional regulator low > 107
Dickeya dianthicola 67-19 0.51 HGI48_RS21025 NAD(P)/FAD-dependent oxidoreductase 0.27 HGI48_RS20995 FadR family transcriptional regulator low > 71
Caulobacter crescentus NA1000 0.50 CCNA_01545 NAD(FAD)-utilizing dehydrogenase 0.27 CCNA_02904 GntR-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01545 NAD(FAD)-utilizing dehydrogenase 0.27 CCNA_02904 GntR-family transcriptional regulator low > 67
Dickeya dianthicola ME23 0.50 DZA65_RS22010 NAD(P)/FAD-dependent oxidoreductase 0.27 DZA65_RS21980 FadR family transcriptional regulator low > 75
Dickeya dadantii 3937 0.49 DDA3937_RS00340 NAD(P)/FAD-dependent oxidoreductase 0.26 DDA3937_RS00375 FadR family transcriptional regulator low > 74
Pectobacterium carotovorum WPP14 0.49 HER17_RS21340 NAD(P)/FAD-dependent oxidoreductase 0.29 HER17_RS16145 FCD domain-containing protein low > 75
Lysobacter sp. OAE881 0.49 ABIE51_RS09810 NAD(P)/FAD-dependent oxidoreductase 0.15 ABIE51_RS10925 FadR/GntR family transcriptional regulator low > 62
Alteromonas macleodii MIT1002 0.49 MIT1002_00118 N-methyltryptophan oxidase 0.18 MIT1002_03004 Pyruvate dehydrogenase complex repressor low > 70
Sphingomonas koreensis DSMZ 15582 0.49 Ga0059261_3388 flavoprotein, HI0933 family 0.20 Ga0059261_1897 Transcriptional regulators low > 68
Phaeobacter inhibens DSM 17395 0.48 PGA1_c09590 uncharacterized protein YhiN 0.19 PGA1_c00760 putative pyruvate dehydrogenase complex repressor low > 62
Rahnella sp. WP5 0.48 EX31_RS05140 NAD(P)/FAD-dependent oxidoreductase 0.30 EX31_RS02080 FadR family transcriptional regulator low > 89
Serratia liquefaciens MT49 0.48 IAI46_24145 NAD(P)/FAD-dependent oxidoreductase 0.31 IAI46_02785 FadR family transcriptional regulator low > 86
Magnetospirillum magneticum AMB-1 0.48 AMB_RS17480 NAD(P)/FAD-dependent oxidoreductase 0.17 AMB_RS01210 FCD domain-containing protein — —
Pantoea sp. MT58 0.47 IAI47_01370 NAD(P)/FAD-dependent oxidoreductase 0.26 IAI47_02900 transcriptional regulator ExuR low > 76
Enterobacter asburiae PDN3 0.46 EX28DRAFT_4070 flavoprotein, HI0933 family 0.27 EX28DRAFT_3162 Transcriptional regulators low > 76
Escherichia coli Nissle 1917 0.46 ECOLIN_RS19955 NAD(P)/FAD-dependent oxidoreductase 0.27 ECOLIN_RS17840 transcriptional regulator ExuR low > 55
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_07855 hypothetical protein 0.18 AO353_04595 GntR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_13765 hypothetical protein 0.36 AO356_24190 GntR family transcriptional regulator low > 104
Escherichia coli ECRC62 0.46 BNILDI_03180 yhiN Uncharacterized protein YhiN 0.27 BNILDI_01225 exuR transcriptional regulator ExuR low > 75
Escherichia coli BL21 0.46 ECD_03341 putative oxidoreductase 0.27 ECD_02963 hexuronate regulon transcriptional repressor; autorepressor low > 61
Enterobacter sp. TBS_079 0.46 MPMX20_04392 hypothetical protein 0.27 MPMX20_04003 Putative L-lactate dehydrogenase operon regulatory protein low > 85
Escherichia coli ECOR38 0.46 HEPCGN_15360 yhiN Uncharacterized protein YhiN 0.27 HEPCGN_17345 exuR transcriptional regulator ExuR low > 87
Escherichia coli ECOR27 0.46 NOLOHH_08380 yhiN Uncharacterized protein YhiN 0.27 NOLOHH_10290 exuR transcriptional regulator ExuR low > 75
Escherichia coli BW25113 0.46 b3492 yhiN predicted oxidoreductase with FAD/NAD(P)-binding domain (NCBI) 0.27 b3094 exuR negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_00211 hypothetical protein 0.27 OHPLBJKB_00604 Putative L-lactate dehydrogenase operon regulatory protein low > 73
Escherichia coli ECRC98 0.46 JDDGAC_20075 yhiN Uncharacterized protein YhiN 0.27 JDDGAC_22145 exuR transcriptional regulator ExuR low > 86
Escherichia coli ECRC99 0.46 KEDOAH_11700 yhiN Uncharacterized protein YhiN 0.27 KEDOAH_09635 exuR transcriptional regulator ExuR — —
Escherichia coli ECRC101 0.46 MCAODC_06960 yhiN Uncharacterized protein YhiN 0.27 MCAODC_09025 exuR transcriptional regulator ExuR low > 87
Escherichia fergusonii Becca 0.46 EFB2_00323 hypothetical protein 0.27 EFB2_00718 Putative L-lactate dehydrogenase operon regulatory protein low > 86
Escherichia coli ECRC100 0.46 OKFHMN_16445 yhiN Uncharacterized protein YhiN 0.27 OKFHMN_18510 exuR transcriptional regulator ExuR low > 80
Escherichia coli ECRC102 0.46 NIAGMN_14210 yhiN Uncharacterized protein YhiN 0.27 NIAGMN_16275 exuR transcriptional regulator ExuR — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_1077 FIG00953568: hypothetical protein 0.19 PfGW456L13_880 Transcriptional regulator, GntR family low > 87
Klebsiella michiganensis M5al 0.45 BWI76_RS26565 membrane protein 0.27 BWI76_RS24740 GntR family transcriptional regulator low > 92
Dinoroseobacter shibae DFL-12 0.43 Dshi_2710 HI0933 family protein (RefSeq) 0.25 Dshi_3048 GntR domain protein (RefSeq) low > 64

Not shown: 47 genomes with orthologs for HSERO_RS04345 only; 1 genomes with orthologs for HSERO_RS16680 only