Conservation of cofitness between HSERO_RS09540 and HSERO_RS02410 in Herbaspirillum seropedicae SmR1

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS09540 diguanylate cyclase 1.0 HSERO_RS02410 acriflavine resistance protein B 0.25 11
Castellaniella sp019104865 MT123 0.39 ABCV34_RS04665 GGDEF domain-containing protein 0.58 ABCV34_RS04225 efflux RND transporter permease subunit low > 48
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_4208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.63 PfGW456L13_2954 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_02445 diguanylate phosphodiesterase 0.63 AO353_26845 acriflavine resistance protein B low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_3740 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.64 Pf1N1B4_4772 RND efflux system, inner membrane transporter CmeB low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.57 Psyr_2282 Hydrophobe/amphiphile efflux-1 HAE1 low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1598 diguanylate cyclase/phosphodiesterase 0.57 Psyr_2282 Hydrophobe/amphiphile efflux-1 HAE1 low > 86
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS35575 diguanylate cyclase 0.66 RR42_RS20650 multidrug efflux RND transporter permease subunit low > 128
Pseudomonas simiae WCS417 0.35 PS417_09320 diguanylate phosphodiesterase 0.62 PS417_12585 acriflavine resistance protein B low > 88
Pseudomonas fluorescens SBW25 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.62 PFLU_RS13280 multidrug efflux RND transporter permease subunit low > 109
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_5779 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.63 Pf6N2E2_1661 RND efflux system, inner membrane transporter CmeB low > 103
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS09975 EAL and GGDEF domain-containing protein 0.62 PFLU_RS13280 multidrug efflux RND transporter permease subunit low > 109
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_19330 diguanylate phosphodiesterase 0.63 AO356_28730 acriflavine resistance protein B low > 104
Pseudomonas sp. RS175 0.35 PFR28_03170 hypothetical protein 0.63 PFR28_02463 Multidrug resistance protein MexB low > 88
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS22805 phosphodiesterase 0.75 ABZR87_RS05315 efflux RND transporter permease subunit low > 80
Acidovorax sp. GW101-3H11 0.34 Ac3H11_1101 diguanylate cyclase/phosphodiesterase 0.68 Ac3H11_4448 RND efflux system, inner membrane transporter CmeB low > 79
Ralstonia solanacearum PSI07 0.34 RPSI07_RS01135 phosphodiesterase 0.76 RPSI07_RS23905 hydrophobe/amphiphile efflux-1 family RND transporter low > 81
Variovorax sp. SCN45 0.33 GFF6204 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) 0.67 GFF3725 RND efflux system, inner membrane transporter low > 127
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS13860 phosphodiesterase 0.48 LRK54_RS02100 multidrug efflux RND transporter permease subunit low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS13575 GGDEF domain-containing protein 0.48 LRK55_RS01875 multidrug efflux RND transporter permease subunit low > 63
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_13885 eAL phosphodiesterase 0.49 OKGIIK_09170 Efflux pump membrane transporter low > 52
Agrobacterium fabrum C58 0.21 Atu0826 hypothetical protein 0.61 Atu3202 RND multidrug efflux transporter low > 89
Sinorhizobium meliloti 1021 0.18 SMc00033 hypothetical protein 0.65 SMc02867 multidrug-efflux system transmembrane protein 0.42 30
Rhodospirillum rubrum S1H 0.14 Rru_A3230 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI) 0.58 Rru_A1118 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) low > 58

Not shown: 11 genomes with orthologs for HSERO_RS09540 only; 22 genomes with orthologs for HSERO_RS02410 only