Conservation of cofitness between HSERO_RS04220 and HSERO_RS02405 in Herbaspirillum seropedicae SmR1

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS04220 epoxyqueuosine reductase 1.0 HSERO_RS02405 multidrug transporter 0.43 1
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 0.51 QEN71_RS02530 efflux transporter outer membrane subunit low > 153
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS15960 iron-sulfur cluster binding protein 0.48 BPHYT_RS16165 multidrug transporter
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03405 epoxyqueuosine reductase 0.60 RR42_RS20655 multidrug transporter low > 128
Ralstonia solanacearum PSI07 0.63 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.55 RPSI07_RS23910 multidrug transporter low > 81
Ralstonia solanacearum GMI1000 0.63 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.55 RS_RS00040 multidrug transporter low > 80
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.55 ABZR87_RS05320 efflux transporter outer membrane subunit 0.45 18
Ralstonia solanacearum UW163 0.62 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.55 UW163_RS04140 multidrug transporter
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.55 RALBFv3_RS09440 multidrug transporter low > 76
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04128 epoxyqueuosine reductase 0.49 H281DRAFT_04169 outer membrane protein, multidrug efflux system 0.39 7
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.40 GFF3841 RND efflux system, outer membrane lipoprotein CmeC low > 90
Acidovorax sp. GW101-3H11 0.60 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.44 Ac3H11_4447 RND efflux system, outer membrane lipoprotein CmeC low > 79
Variovorax sp. OAS795 0.59 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.46 ABID97_RS00330 efflux transporter outer membrane subunit low > 91
Escherichia coli ECOR38 0.55 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 HEPCGN_00590 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 87
Escherichia coli ECRC100 0.55 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 OKFHMN_07700 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 80
Variovorax sp. SCN45 0.55 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.43 GFF3724 Efflux transport system, outer membrane factor (OMF) lipoprotein low > 127
Escherichia coli ECRC102 0.55 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 NIAGMN_05755 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC
Escherichia coli ECRC99 0.55 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 KEDOAH_20270 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC
Escherichia coli ECRC98 0.55 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 JDDGAC_11345 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 86
Escherichia coli ECRC101 0.55 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 MCAODC_26915 ibeB Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 87
Escherichia coli ECRC62 0.55 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 BNILDI_22090 cusC Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 75
Escherichia coli BW25113 0.55 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.39 b0572 cusC copper/silver efflux system, outer membrane component (NCBI) low > 76
Escherichia coli ECOR27 0.55 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.39 NOLOHH_24080 cusC Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03876 Epoxyqueuosine reductase 0.38 OHPLBJKB_03137 Cation efflux system protein CusC low > 73
Escherichia coli BL21 0.55 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.39 ECD_00533 copper/silver efflux system, outer membrane component low > 61
Escherichia coli Nissle 1917 0.55 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.39 ECOLIN_RS03130 Cu(+)/Ag(+) efflux RND transporter outer membrane channel CusC
Escherichia fergusonii Becca 0.55 EFB2_04369 Epoxyqueuosine reductase 0.39 EFB2_03522 Cation efflux system protein CusC low > 86
Lysobacter sp. OAE881 0.53 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.25 ABIE51_RS10130 efflux transporter outer membrane subunit low > 62
Pantoea sp. MT58 0.52 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.22 IAI47_12395 efflux transporter outer membrane subunit low > 76
Dechlorosoma suillum PS 0.50 Dsui_3502 iron-sulfur cluster binding protein, putative 0.36 Dsui_3183 efflux transporter, outer membrane factor lipoprotein, NodT family
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.34 B158DRAFT_0732 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family low > 40
Rhizobium sp. OAE497 0.34 ABIE40_RS01310 tRNA epoxyqueuosine(34) reductase QueG 0.22 ABIE40_RS14220 efflux transporter outer membrane subunit low > 107
Agrobacterium fabrum C58 0.32 Atu0292 iron-sulfur cluster binding protein 0.20 Atu2552 nodulation protein T precursor
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS07695 tRNA epoxyqueuosine(34) reductase QueG 0.20 CA265_RS05050 RND transporter low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS07975 tRNA epoxyqueuosine(34) reductase QueG 0.17 ABZR88_RS12550 efflux transporter outer membrane subunit low > 71
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS06835 tRNA epoxyqueuosine(34) reductase QueG 0.25 HMPREF1078_RS00015 efflux transporter outer membrane subunit low > 61
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3245 putative iron-sulfur cluster-binding protein (NCBI ptt file) 0.25 BT0306 outer membrane protein oprM precursor (NCBI ptt file) low > 81

Not shown: 52 genomes with orthologs for HSERO_RS04220 only; 5 genomes with orthologs for HSERO_RS02405 only