Conservation of cofitness between HSERO_RS22710 and HSERO_RS02260 in Herbaspirillum seropedicae SmR1

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22710 hypothetical protein 1.0 HSERO_RS02260 DNA polymerase I 0.40 4
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS24360 DUF454 domain-containing protein 0.50 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS24360 DUF454 domain-containing protein 0.50 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas putida KT2440 0.53 PP_1004 conserved protein of unknown function 0.52 PP_0123 DNA polymerase I, 5 low > 96
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_05250 hypothetical protein 0.50 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2904 Hypothetical protein DUF454 0.50 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas sp. RS175 0.49 PFR28_00555 Inner membrane protein YbaN 0.50 PFR28_04624 DNA polymerase I low > 88
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.843.1 FIG039061: hypothetical protein related to heme utilization 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS21675 membrane protein 0.71 RR42_RS15050 DNA polymerase I low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF1187 Hypothetical protein DUF454 0.59 GFF5584 DNA polymerase I (EC 2.7.7.7) — —
Lysobacter sp. OAE881 0.37 ABIE51_RS03015 YbaN family protein 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_02504 Inner membrane protein YbaN 0.42 MPMX26_00574 DNA polymerase I low > 36
Vibrio cholerae E7946 ATCC 55056 0.27 CSW01_05355 DUF454 domain-containing protein 0.53 CSW01_00560 DNA polymerase I low > 62
Kangiella aquimarina DSM 16071 0.26 B158DRAFT_0945 Uncharacterized protein conserved in bacteria 0.55 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Rhodospirillum rubrum S1H 0.24 Rru_A2502 Protein of unknown function DUF454 (NCBI) 0.35 Rru_A3514 DNA polymerase A (NCBI) — —
Klebsiella michiganensis M5al 0.22 BWI76_RS06810 hypothetical protein 0.51 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.22 IAI47_14485 DUF454 family protein 0.52 IAI47_00430 DNA polymerase I low > 76
Shewanella amazonensis SB2B 0.22 Sama_1308 hypothetical protein (RefSeq) 0.52 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Escherichia coli Nissle 1917 0.22 ECOLIN_RS02785 DUF454 family protein 0.52 ECOLIN_RS22270 DNA polymerase I — —
Escherichia fergusonii Becca 0.22 EFB2_03590 Inner membrane protein YbaN 0.52 EFB2_04753 DNA polymerase I — —
Escherichia coli ECOR27 0.21 NOLOHH_01105 ybaN DUF454 domain-containing protein 0.52 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECOR38 0.21 HEPCGN_06790 ybaN DUF454 domain-containing protein 0.52 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC100 0.21 OKFHMN_08175 ybaN DUF454 domain-containing protein 0.52 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.21 NIAGMN_06230 ybaN DUF454 domain-containing protein 0.52 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli BW25113 0.21 b0468 ybaN conserved inner membrane protein (NCBI) 0.52 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli BL21 0.21 ECD_00419 DUF454 family inner membrane protein 0.52 ECD_03749 5 — —
Escherichia coli ECRC99 0.21 KEDOAH_19790 ybaN DUF454 domain-containing protein 0.52 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC98 0.21 JDDGAC_11825 ybaN DUF454 domain-containing protein 0.52 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03206 Inner membrane protein YbaN 0.51 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC62 0.21 BNILDI_22525 ybaN DUF454 domain-containing protein 0.51 BNILDI_05250 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.21 EX28DRAFT_2490 Uncharacterized protein conserved in bacteria 0.51 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli ECRC101 0.20 MCAODC_27400 ybaN DUF454 domain-containing protein 0.52 MCAODC_04650 polA DNA polymerase I — —
Enterobacter sp. TBS_079 0.20 MPMX20_01070 Inner membrane protein YbaN 0.51 MPMX20_04601 DNA polymerase I low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF4386 FIG039061: hypothetical protein related to heme utilization 0.51 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Rhizobium sp. OAE497 0.19 ABIE40_RS23650 YbaN family protein 0.37 ABIE40_RS00490 DNA polymerase I low > 107
Castellaniella sp019104865 MT123 0.17 ABCV34_RS06460 YbaN family protein 0.58 ABCV34_RS02195 DNA polymerase I low > 48

Not shown: 0 genomes with orthologs for HSERO_RS22710 only; 64 genomes with orthologs for HSERO_RS02260 only