Conservation of cofitness between HER17_RS20550 and HER17_RS21175 in Pectobacterium carotovorum WPP14

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS20550 fatty acid oxidation complex subunit alpha FadB 1.0 HER17_RS21175 glyoxylate/hydroxypyruvate reductase GhrB 0.62 10
Serratia liquefaciens MT49 0.78 IAI46_01130 fatty acid oxidation complex subunit alpha FadB 0.78 IAI46_00085 glyoxylate/hydroxypyruvate reductase GhrB low > 86
Escherichia coli BW25113 0.75 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 0.70 b3553 yiaE putative dehydrogenase (VIMSS) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.71 NOLOHH_07965 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 75
Escherichia coli ECRC98 0.75 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.71 JDDGAC_19650 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 86
Escherichia coli ECRC100 0.75 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.71 OKFHMN_16020 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 80
Escherichia coli ECRC101 0.75 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.71 MCAODC_06535 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 87
Escherichia coli ECRC99 0.75 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.71 KEDOAH_12130 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECOR38 0.75 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.70 HEPCGN_14910 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 87
Escherichia coli ECRC102 0.75 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.71 NIAGMN_13780 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.66 EX28DRAFT_3817 Lactate dehydrogenase and related dehydrogenases low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_04207 Fatty acid oxidation complex subunit alpha 0.70 OHPLBJKB_00153 Glyoxylate/hydroxypyruvate reductase B low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF273 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.68 GFF458 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) low > 78
Enterobacter sp. TBS_079 0.73 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.71 MPMX20_00177 Glyoxylate/hydroxypyruvate reductase B low > 85
Klebsiella michiganensis M5al 0.73 BWI76_RS01365 multifunctional fatty acid oxidation complex subunit alpha 0.71 BWI76_RS26960 bifunctional glyoxylate/hydroxypyruvate reductase B low > 92
Escherichia coli ECRC62 0.73 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 0.71 BNILDI_03580 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 75
Escherichia coli BL21 0.73 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.71 ECD_03403 glyoxylate/hydroxypyruvate reductase B low > 61
Escherichia fergusonii Becca 0.73 EFB2_04771 Fatty acid oxidation complex subunit alpha 0.71 EFB2_00254 Glyoxylate/hydroxypyruvate reductase B low > 86
Rahnella sp. WP5 0.73 EX31_RS14565 fatty acid oxidation complex subunit alpha FadB 0.72 EX31_RS05925 glyoxylate/hydroxypyruvate reductase GhrB low > 89
Dickeya dadantii 3937 0.72 DDA3937_RS20250 fatty acid oxidation complex subunit alpha FadB 0.76 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS00975 fatty acid oxidation complex subunit alpha FadB 0.75 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS01035 fatty acid oxidation complex subunit alpha FadB 0.75 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB low > 75
Pantoea sp. MT58 0.71 IAI47_18230 fatty acid oxidation complex subunit alpha FadB 0.63 IAI47_00110 glyoxylate/hydroxypyruvate reductase GhrB low > 76
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.47 Psyr_1043 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.47 Psyr_1043 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.52 PFLU_RS13240 D-glycerate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.53 PS417_07575 multifunctional fatty acid oxidation complex subunit alpha 0.52 PS417_12555 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) low > 88
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.52 PFLU_RS13240 D-glycerate dehydrogenase low > 109
Pseudomonas sp. RS175 0.52 PFR28_01110 Fatty acid oxidation complex subunit alpha 0.53 PFR28_01596 Glyoxylate/hydroxypyruvate reductase B low > 88
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.52 Pf6N2E2_627 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) — —
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.51 Pf1N1B4_4763 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.52 PfGW456L13_2948 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) low > 87
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.51 AO356_24675 bifunctional glyoxylate/hydroxypyruvate reductase B — —
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00510 multifunctional fatty acid oxidation complex subunit alpha 0.54 AO353_26885 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) low > 101
Pseudomonas stutzeri RCH2 0.52 Psest_2654 fatty oxidation complex, alpha subunit FadB 0.27 Psest_0431 Lactate dehydrogenase and related dehydrogenases — —
Pseudomonas putida KT2440 0.52 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.49 PP_3376 putative phosphonate dehydrogenase low > 96
Acinetobacter radioresistens SK82 0.49 MPMX26_00226 Fatty acid oxidation complex subunit alpha 0.41 MPMX26_01125 Glyoxylate/hydroxypyruvate reductase B low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2109 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.34 GFF3835 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) low > 90
Rhodopseudomonas palustris CGA009 0.24 TX73_019255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.25 TX73_015430 hydroxyacid dehydrogenase low > 86
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS12585 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.56 ABZR87_RS09030 NAD(P)-dependent oxidoreductase low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.41 RPSI07_RS02805 D-glycerate dehydrogenase low > 81
Ralstonia solanacearum UW163 0.22 UW163_RS14440 3-hydroxyacyl-CoA dehydrogenase 0.31 UW163_RS11805 D-glycerate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.22 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase 0.41 RS_RS21645 D-glycerate dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS01130 3-hydroxyacyl-CoA dehydrogenase 0.31 RALBFv3_RS14340 D-glycerate dehydrogenase low > 76

Not shown: 10 genomes with orthologs for HER17_RS20550 only; 30 genomes with orthologs for HER17_RS21175 only