Conservation of cofitness between HER17_RS11620 and HER17_RS13060 in Pectobacterium carotovorum WPP14

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS11620 NUDIX hydrolase 1.0 HER17_RS13060 DNA starvation/stationary phase protection protein Dps 0.77 19
Escherichia coli BL21 0.78 ECD_01132 bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase 0.78 ECD_00779 Fe-binding and storage protein; stress-inducible DNA-binding protein — —
Escherichia coli ECRC101 0.78 MCAODC_22335 nudJ phosphatase NudJ 0.78 MCAODC_25420 dps DNA starvation/stationary phase protection protein Dps low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_02534 Phosphatase NudJ 0.78 OHPLBJKB_02901 DNA protection during starvation protein low > 73
Escherichia coli BW25113 0.78 b1134 ymfB bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) 0.78 b0812 dps DNA protection during starvation conditions (NCBI) low > 76
Escherichia coli ECRC100 0.78 OKFHMN_00750 nudJ phosphatase NudJ 0.78 OKFHMN_06205 dps DNA starvation/stationary phase protection protein Dps low > 80
Escherichia coli ECOR27 0.78 NOLOHH_20895 nudJ phosphatase NudJ 0.78 NOLOHH_22555 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia coli ECRC99 0.78 KEDOAH_24835 nudJ phosphatase NudJ 0.78 KEDOAH_21705 dps DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC98 0.78 JDDGAC_06615 nudJ phosphatase NudJ 0.78 JDDGAC_09840 dps DNA starvation/stationary phase protection protein Dps low > 86
Escherichia coli Nissle 1917 0.78 ECOLIN_RS06630 phosphatase NudJ 0.77 ECOLIN_RS04330 DNA starvation/stationary phase protection protein Dps — —
Escherichia coli ECRC62 0.78 BNILDI_19060 nudJ phosphatase NudJ 0.78 BNILDI_20835 dps DNA starvation/stationary phase protection protein Dps low > 75
Escherichia fergusonii Becca 0.78 EFB2_02841 Phosphatase NudJ 0.78 EFB2_03293 DNA protection during starvation protein low > 86
Escherichia coli ECOR38 0.78 HEPCGN_24225 nudJ phosphatase NudJ 0.78 HEPCGN_01835 dps DNA starvation/stationary phase protection protein Dps low > 87
Escherichia coli ECRC102 0.78 NIAGMN_24895 nudJ phosphatase NudJ 0.78 NIAGMN_04250 dps DNA starvation/stationary phase protection protein Dps — —
Dickeya dadantii 3937 0.77 DDA3937_RS11480 NUDIX hydrolase 0.79 DDA3937_RS08815 DNA starvation/stationary phase protection protein Dps low > 74
Serratia liquefaciens MT49 0.77 IAI46_10445 NUDIX hydrolase 0.77 IAI46_07545 DNA starvation/stationary phase protection protein Dps low > 86
Dickeya dianthicola ME23 0.76 DZA65_RS11860 NUDIX hydrolase 0.79 DZA65_RS09205 DNA starvation/stationary phase protection protein Dps — —
Dickeya dianthicola 67-19 0.76 HGI48_RS11525 NUDIX hydrolase 0.79 HGI48_RS08890 DNA starvation/stationary phase protection protein Dps low > 71
Klebsiella michiganensis M5al 0.75 BWI76_RS11320 NUDIX hydrolase 0.76 BWI76_RS08980 DNA starvation/stationary phase protection protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3419 Nudix-like NDP and NTP phosphohydrolase YmfB 0.77 GFF707 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 78
Enterobacter sp. TBS_079 0.71 MPMX20_01818 Phosphatase NudJ 0.77 MPMX20_01442 DNA protection during starvation protein low > 85
Erwinia tracheiphila SCR3 0.71 LU632_RS14570 NUDIX hydrolase 0.78 LU632_RS09460 dps DNA starvation/stationary phase protection protein Dps low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1796 ADP-ribose pyrophosphatase 0.77 EX28DRAFT_2174 DNA-binding ferritin-like protein (oxidative damage protectant) low > 76
Rahnella sp. WP5 0.71 EX31_RS24580 NUDIX hydrolase 0.84 EX31_RS18915 DNA starvation/stationary phase protection protein Dps low > 89
Pantoea sp. MT58 0.65 IAI47_11910 NUDIX hydrolase 0.77 IAI47_13195 DNA starvation/stationary phase protection protein Dps low > 76
Shewanella amazonensis SB2B 0.41 Sama_2061 MutT/nudix family protein (RefSeq) 0.16 Sama_2598 Dps family protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.40 Shewana3_1748 NUDIX hydrolase (RefSeq) 0.18 Shewana3_0985 Ferritin, Dps family protein (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_06880 Phosphatase NudJ 0.18 OKGIIK_14855 dps DNA starvation/stationary phase protection protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS00430 NUDIX hydrolase 0.17 LRK54_RS08030 DNA starvation/stationary phase protection protein low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00170 NUDIX hydrolase 0.17 LRK55_RS07780 DNA starvation/stationary phase protection protein low > 63
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_1838 ADP-ribose pyrophosphatase 0.16 B158DRAFT_0476 DNA-binding ferritin-like protein (oxidative damage protectant) low > 40
Pseudomonas sp. RS175 0.29 PFR28_02618 Phosphatase NudJ 0.15 PFR28_03419 DNA protection during starvation protein 2 low > 88
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_287 Nudix-like NDP and NTP phosphohydrolase YmfB 0.15 Pf6N2E2_5529 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 103
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS18575 NUDIX hydrolase 0.16 PFLU_RS24120 DNA starvation/stationary phase protection protein 0.11 37
Pseudomonas fluorescens SBW25 0.28 PFLU_RS18575 NUDIX hydrolase 0.16 PFLU_RS24120 DNA starvation/stationary phase protection protein low > 109
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4361 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.19 Ac3H11_786 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) — —
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_22115 NUDIX hydrolase 0.16 AO356_17990 ferritin low > 104
Pseudomonas simiae WCS417 0.26 PS417_16535 NUDIX hydrolase 0.17 PS417_22480 ferritin low > 88
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF2602 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.20 GFF2804 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_3189 NUDIX hydrolase 0.17 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_3189 NUDIX hydrolase 0.17 Psyr_1404 Ferritin and Dps low > 86
Pseudomonas putida KT2440 0.25 PP_4013 MutT/nudix family protein 0.15 PP_1210 DNA-binding stress protein low > 96
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS03475 NUDIX hydrolase 0.16 HSERO_RS22570 DNA-binding protein low > 78

Not shown: 25 genomes with orthologs for HER17_RS11620 only; 12 genomes with orthologs for HER17_RS13060 only