Conservation of cofitness between HER17_RS16015 and HER17_RS08355 in Pectobacterium carotovorum WPP14

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS16015 proline-specific permease ProY 1.0 HER17_RS08355 RNA polymerase sigma factor FliA 0.69 5
Dickeya dianthicola ME23 0.88 DZA65_RS05835 proline-specific permease ProY 0.94 DZA65_RS13835 RNA polymerase sigma factor FliA low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS05510 proline-specific permease ProY 0.94 HGI48_RS13350 RNA polymerase sigma factor FliA low > 71
Rahnella sp. WP5 0.85 EX31_RS22070 proline-specific permease ProY 0.87 EX31_RS09450 RNA polymerase sigma factor FliA low > 89
Pantoea sp. MT58 0.83 IAI47_14830 proline-specific permease ProY 0.85 IAI47_08160 RNA polymerase sigma factor FliA low > 76
Serratia liquefaciens MT49 0.83 IAI46_04800 proline-specific permease ProY 0.86 IAI46_15785 RNA polymerase sigma factor FliA low > 86
Dickeya dadantii 3937 0.82 DDA3937_RS05450 proline-specific permease ProY 0.95 DDA3937_RS13300 RNA polymerase sigma factor FliA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF4300 Proline-specific permease proY 0.82 GFF1690 RNA polymerase sigma factor for flagellar operon low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2572 Gamma-aminobutyrate permease and related permeases 0.82 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_00989 Proline-specific permease ProY 0.82 MPMX20_02847 RNA polymerase sigma factor FliA low > 85
Escherichia coli ECOR38 0.78 HEPCGN_07170 proY proline-specific permease ProY 0.81 HEPCGN_04135 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli BW25113 0.78 b0402 proY predicted cryptic proline transporter (NCBI) 0.81 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) low > 76
Escherichia coli ECRC100 0.78 OKFHMN_08530 proY proline-specific permease ProY 0.81 OKFHMN_25780 fliA RNA polymerase sigma factor FliA low > 80
Escherichia fergusonii Becca 0.78 EFB2_03655 Proline-specific permease ProY 0.81 EFB2_02023 RNA polymerase sigma factor FliA low > 86
Escherichia coli ECRC101 0.78 MCAODC_27755 proY proline-specific permease ProY 0.81 MCAODC_19610 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECOR27 0.78 NOLOHH_01460 proY proline-specific permease ProY 0.81 NOLOHH_16400 fliA RNA polymerase sigma factor FliA low > 75
Escherichia coli ECRC102 0.78 NIAGMN_06585 proY proline-specific permease ProY 0.81 NIAGMN_02270 fliA RNA polymerase sigma factor FliA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_03274 Proline-specific permease ProY 0.81 OHPLBJKB_01807 RNA polymerase sigma factor FliA low > 73
Escherichia coli ECRC98 0.78 JDDGAC_12185 proY proline-specific permease ProY 0.81 JDDGAC_00370 fliA RNA polymerase sigma factor FliA low > 86
Escherichia coli ECRC99 0.78 KEDOAH_19435 proY proline-specific permease ProY 0.81 KEDOAH_02310 fliA RNA polymerase sigma factor FliA — —
Escherichia coli Nissle 1917 0.78 ECOLIN_RS02425 proline-specific permease ProY 0.81 ECOLIN_RS10975 RNA polymerase sigma factor FliA low > 55
Escherichia coli ECRC62 0.78 BNILDI_22875 proY proline-specific permease ProY 0.81 BNILDI_15190 fliA RNA polymerase sigma factor FliA low > 75
Erwinia tracheiphila SCR3 0.72 LU632_RS18885 proY proline-specific permease ProY 0.86 LU632_RS13785 RNA polymerase sigma factor FliA low > 74
Pseudomonas simiae WCS417 0.64 PS417_01755 proline-specific permease 0.43 PS417_19695 flagellar biosynthesis sigma factor low > 88
Pseudomonas fluorescens SBW25 0.64 PFLU_RS01810 amino acid permease 0.43 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS01810 amino acid permease 0.43 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_4834 histidine:proton symporter, AAT family 0.44 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_4834 histidine:proton symporter, AAT family 0.44 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS14635 proline-specific permease 0.45 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor low > 128
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_1580 Histidine transport protein (permease) 0.44 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas putida KT2440 0.63 PP_5031 proline (histidine) APC transporter 0.43 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons low > 96
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_318 Histidine transport protein (permease) 0.43 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_12275 histidine permease (from data) 0.44 AO353_18785 flagellar biosynthesis sigma factor low > 101
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS09765 amino acid permease 0.51 ABZR87_RS18040 RNA polymerase sigma factor FliA low > 80
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS05185 amino acid permease 0.39 ABZR86_RS20265 RNA polymerase sigma factor FliA low > 74
Pseudomonas sp. RS175 0.56 PFR28_03490 Proline-specific permease ProY 0.44 PFR28_00852 RNA polymerase sigma factor FliA low > 88
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_17670 L-alanine and D-alanine permease (from data) 0.43 AO356_03730 flagellar biosynthesis sigma factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5459 D-serine/D-alanine/glycine transporter 0.43 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon low > 103
Rhodanobacter denitrificans MT42 0.53 LRK55_RS02640 amino acid permease 0.39 LRK55_RS13320 RNA polymerase sigma factor FliA low > 63
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS02890 amino acid permease 0.39 LRK54_RS13580 RNA polymerase sigma factor FliA low > 59
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_09870 Amino acid permease 0.40 OKGIIK_02830 fliA RNA polymerase sigma factor FliA low > 52

Not shown: 3 genomes with orthologs for HER17_RS16015 only; 29 genomes with orthologs for HER17_RS08355 only