Conservation of cofitness between HER17_RS16300 and HER17_RS05460 in Pectobacterium carotovorum WPP14

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS16300 sigma E protease regulator RseP 1.0 HER17_RS05460 class I SAM-dependent methyltransferase 0.67 11
Dickeya dadantii 3937 0.81 DDA3937_RS05150 sigma E protease regulator RseP 0.62 DDA3937_RS16055 class I SAM-dependent methyltransferase low > 74
Dickeya dianthicola 67-19 0.81 HGI48_RS05150 sigma E protease regulator RseP 0.61 HGI48_RS16175 methyltransferase domain-containing protein low > 71
Serratia liquefaciens MT49 0.80 IAI46_20225 sigma E protease regulator RseP 0.68 IAI46_04140 class I SAM-dependent methyltransferase — —
Dickeya dianthicola ME23 0.79 DZA65_RS05490 sigma E protease regulator RseP 0.61 DZA65_RS17260 class I SAM-dependent methyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF46 Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage 0.57 GFF4045 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) — —
Rahnella sp. WP5 0.79 EX31_RS13000 sigma E protease regulator RseP 0.63 EX31_RS21195 class I SAM-dependent methyltransferase — —
Enterobacter asburiae PDN3 0.78 EX28DRAFT_3764 RIP metalloprotease RseP 0.59 EX28DRAFT_2681 Methyltransferase domain — —
Enterobacter sp. TBS_079 0.78 MPMX20_00860 Regulator of sigma-E protease RseP 0.59 MPMX20_00898 hypothetical protein — —
Klebsiella michiganensis M5al 0.77 BWI76_RS05250 zinc metallopeptidase RseP 0.59 BWI76_RS05445 type 11 methyltransferase — —
Pantoea sp. MT58 0.76 IAI47_15495 sigma E protease regulator RseP 0.58 IAI47_15335 class I SAM-dependent methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03487 Regulator of sigma-E protease RseP 0.61 OHPLBJKB_03448 hypothetical protein — —
Escherichia coli ECRC62 0.75 BNILDI_09150 rseP sigma E protease regulator RseP 0.61 BNILDI_09350 yafS Uncharacterized protein YafS — —
Escherichia coli ECRC100 0.75 OKFHMN_10175 rseP sigma E protease regulator RseP 0.60 OKFHMN_09975 yafS Uncharacterized protein YafS — —
Escherichia coli ECRC102 0.75 NIAGMN_08025 rseP sigma E protease regulator RseP 0.60 NIAGMN_07825 yafS Uncharacterized protein YafS — —
Escherichia fergusonii Becca 0.75 EFB2_03868 Regulator of sigma-E protease RseP 0.60 EFB2_03830 hypothetical protein — —
Escherichia coli ECRC99 0.75 KEDOAH_17980 rseP sigma E protease regulator RseP 0.60 KEDOAH_18180 yafS Uncharacterized protein YafS — —
Escherichia coli ECOR38 0.75 HEPCGN_08130 rseP sigma E protease regulator RseP 0.60 HEPCGN_07915 yafS Uncharacterized protein YafS — —
Escherichia coli ECRC101 0.75 MCAODC_00690 rseP sigma E protease regulator RseP 0.60 MCAODC_00490 yafS Uncharacterized protein YafS — —
Escherichia coli BW25113 0.75 b0176 yaeL zinc metallopeptidase (NCBI) 0.60 b0213 yafS orf, hypothetical protein (VIMSS) — —
Escherichia coli BL21 0.75 ECD_00174 inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease 0.60 ECD_00206 putative S-adenosyl-L-methionine-dependent methyltransferase — —
Escherichia coli ECRC98 0.75 JDDGAC_13770 rseP sigma E protease regulator RseP 0.60 JDDGAC_13570 yafS Uncharacterized protein YafS — —
Escherichia coli ECOR27 0.75 NOLOHH_02520 rseP sigma E protease regulator RseP 0.60 NOLOHH_02320 yafS Uncharacterized protein YafS — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS00960 sigma E protease regulator RseP 0.60 ECOLIN_RS01165 class I SAM-dependent methyltransferase — —
Erwinia tracheiphila SCR3 0.73 LU632_RS19930 rseP sigma E protease regulator RseP 0.58 LU632_RS01085 class I SAM-dependent methyltransferase low > 74
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_11475 zinc metalloprotease 0.40 CSW01_11390 class I SAM-dependent methyltransferase — —
Shewanella sp. ANA-3 0.55 Shewana3_2808 peptidase RseP (RefSeq) 0.32 Shewana3_2368 methyltransferase type 11 (RefSeq) — —
Shewanella oneidensis MR-1 0.54 SO1636 membrane-associated zinc metalloprotease, putative (NCBI ptt file) 0.33 SO2562 conserved hypothetical protein (NCBI ptt file) — —
Shewanella loihica PV-4 0.53 Shew_2628 putative membrane-associated zinc metalloprotease (RefSeq) 0.28 Shew_2113 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.52 Sama_1146 membrane-associated zinc metalloprotease, putative (RefSeq) 0.34 Sama_1883 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.51 MIT1002_01011 Regulator of sigma E protease 0.30 MIT1002_02493 Methyltransferase domain protein low > 70
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_16495 zinc metallopeptidase RseP 0.11 AO353_23495 SAM-dependent methyltransferase low > 101
Pseudomonas sp. RS175 0.41 PFR28_00403 Regulator of sigma-E protease RseP 0.11 PFR28_01553 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_3091 Membrane-associated zinc metalloprotease 0.11 Pf1N1B4_4597 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_06005 zinc metallopeptidase RseP 0.11 AO356_24485 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_3062 Membrane-associated zinc metalloprotease 0.11 Pf6N2E2_588 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) — —
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_1087 site-2 protease. Metallo peptidase. MEROPS family M50B 0.11 B158DRAFT_1062 Methylase involved in ubiquinone/menaquinone biosynthesis low > 40
Herbaspirillum seropedicae SmR1 0.33 HSERO_RS10910 peptidase 0.18 HSERO_RS17115 methyltransferase type 11 — —
Variovorax sp. OAS795 0.33 ABID97_RS17135 RIP metalloprotease RseP 0.15 ABID97_RS14735 methyltransferase domain-containing protein low > 91

Not shown: 45 genomes with orthologs for HER17_RS16300 only; 0 genomes with orthologs for HER17_RS05460 only