Conservation of cofitness between HER17_RS07710 and HER17_RS05460 in Pectobacterium carotovorum WPP14

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS07710 UvrY/SirA/GacA family response regulator transcription factor 1.0 HER17_RS05460 class I SAM-dependent methyltransferase 0.67 19
Dickeya dianthicola ME23 0.92 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor 0.61 DZA65_RS17260 class I SAM-dependent methyltransferase low > 75
Dickeya dianthicola 67-19 0.91 HGI48_RS13800 UvrY/SirA/GacA family response regulator transcription factor 0.61 HGI48_RS16175 methyltransferase domain-containing protein low > 71
Dickeya dadantii 3937 0.91 DDA3937_RS13705 UvrY/SirA/GacA family response regulator transcription factor 0.62 DDA3937_RS16055 class I SAM-dependent methyltransferase low > 74
Serratia liquefaciens MT49 0.88 IAI46_09205 UvrY/SirA/GacA family response regulator transcription factor 0.68 IAI46_04140 class I SAM-dependent methyltransferase low > 86
Rahnella sp. WP5 0.87 EX31_RS24145 UvrY/SirA/GacA family response regulator transcription factor 0.63 EX31_RS21195 class I SAM-dependent methyltransferase low > 89
Pantoea sp. MT58 0.86 IAI47_12470 UvrY/SirA/GacA family response regulator transcription factor 0.58 IAI47_15335 class I SAM-dependent methyltransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF1699 BarA-associated response regulator UvrY (= GacA = SirA) 0.57 GFF4045 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) low > 78
Escherichia coli Nissle 1917 0.84 ECOLIN_RS10900 UvrY/SirA/GacA family response regulator transcription factor 0.60 ECOLIN_RS01165 class I SAM-dependent methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.84 OHPLBJKB_01815 Response regulator UvrY 0.61 OHPLBJKB_03448 hypothetical protein low > 73
Escherichia coli BW25113 0.84 b1914 uvrY response regulator (NCBI) 0.60 b0213 yafS orf, hypothetical protein (VIMSS) low > 76
Escherichia fergusonii Becca 0.84 EFB2_02032 Response regulator UvrY 0.60 EFB2_03830 hypothetical protein low > 86
Escherichia coli ECRC99 0.84 KEDOAH_02270 uvrC excinuclease ABC subunit UvrC 0.60 KEDOAH_18180 yafS Uncharacterized protein YafS — —
Escherichia coli ECRC100 0.84 OKFHMN_25820 uvrC excinuclease ABC subunit UvrC 0.60 OKFHMN_09975 yafS Uncharacterized protein YafS low > 80
Escherichia coli ECRC101 0.84 MCAODC_19570 uvrC excinuclease ABC subunit UvrC 0.60 MCAODC_00490 yafS Uncharacterized protein YafS low > 87
Escherichia coli ECOR27 0.84 NOLOHH_16440 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.60 NOLOHH_02320 yafS Uncharacterized protein YafS low > 75
Escherichia coli ECRC62 0.84 BNILDI_15230 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.61 BNILDI_09350 yafS Uncharacterized protein YafS low > 75
Escherichia coli ECRC102 0.84 NIAGMN_02230 uvrC excinuclease ABC subunit UvrC 0.60 NIAGMN_07825 yafS Uncharacterized protein YafS — —
Escherichia coli ECRC98 0.84 JDDGAC_00410 uvrC excinuclease ABC subunit UvrC 0.60 JDDGAC_13570 yafS Uncharacterized protein YafS low > 86
Escherichia coli ECOR38 0.84 HEPCGN_04175 uvrC excinuclease ABC subunit UvrC 0.60 HEPCGN_07915 yafS Uncharacterized protein YafS low > 87
Enterobacter sp. TBS_079 0.83 MPMX20_02839 Response regulator UvrY 0.59 MPMX20_00898 hypothetical protein 0.30 68
Enterobacter asburiae PDN3 0.83 EX28DRAFT_0633 two component transcriptional regulator, LuxR family 0.59 EX28DRAFT_2681 Methyltransferase domain low > 76
Erwinia tracheiphila SCR3 0.83 LU632_RS10190 uvrY UvrY/SirA/GacA family response regulator transcription factor 0.58 LU632_RS01085 class I SAM-dependent methyltransferase — —
Klebsiella michiganensis M5al 0.82 BWI76_RS18335 DNA-binding response regulator 0.59 BWI76_RS05445 type 11 methyltransferase low > 92
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_06135 two-component system response regulator UvrY 0.40 CSW01_11390 class I SAM-dependent methyltransferase — —
Shewanella sp. ANA-3 0.68 Shewana3_1608 response regulator (RefSeq) 0.32 Shewana3_2368 methyltransferase type 11 (RefSeq) low > 73
Shewanella loihica PV-4 0.68 Shew_1824 response regulator (RefSeq) 0.28 Shew_2113 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.67 SO1860 DNA-binding response regulator, LuxR family (NCBI ptt file) 0.33 SO2562 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.63 Sama_1607 response regulator (RefSeq) 0.34 Sama_1883 hypothetical protein (RefSeq) low > 62
Pseudomonas sp. RS175 0.56 PFR28_01410 Response regulator GacA 0.11 PFR28_01553 hypothetical protein low > 88
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_1272 two component transcriptional regulator, LuxR family 0.11 B158DRAFT_1062 Methylase involved in ubiquinone/menaquinone biosynthesis low > 40
Alteromonas macleodii MIT1002 0.53 MIT1002_02154 Response regulator UvrY 0.30 MIT1002_02493 Methyltransferase domain protein low > 70
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_21830 chemotaxis protein CheY 0.11 AO353_23495 SAM-dependent methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_00355 chemotaxis protein CheY 0.11 AO356_24485 SAM-dependent methyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_5619 BarA-associated response regulator UvrY (= GacA = SirA) 0.11 Pf1N1B4_4597 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_2022 BarA-associated response regulator UvrY (= GacA = SirA) 0.11 Pf6N2E2_588 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) — —
Variovorax sp. OAS795 0.37 ABID97_RS07360 response regulator transcription factor 0.15 ABID97_RS14735 methyltransferase domain-containing protein low > 91
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS13890 LuxR family transcriptional regulator 0.18 HSERO_RS17115 methyltransferase type 11 — —

Not shown: 43 genomes with orthologs for HER17_RS07710 only; 1 genomes with orthologs for HER17_RS05460 only