Conservation of cofitness between PS417_12915 and PS417_00405 in Pseudomonas simiae WCS417

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_12915 DNA-binding protein 1.0 PS417_00405 DNA polymerase I 0.20 19
Pseudomonas fluorescens SBW25 0.90 PFLU_RS13585 DNA-binding protein 0.96 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS13585 DNA-binding protein 0.96 PFLU_RS00395 DNA polymerase I low > 109
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS11120 DNA-binding protein 0.50 RR42_RS15050 DNA polymerase I low > 128
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS18565 PAS domain-containing protein 0.50 QEN71_RS17885 DNA polymerase I — —
Acidovorax sp. GW101-3H11 0.69 Ac3H11_38 YheO-like PAS domain 0.47 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS09825 helix-turn-helix transcriptional regulator 0.58 HER17_RS21470 DNA polymerase I — —
Dickeya dadantii 3937 0.68 DDA3937_RS08080 PAS domain-containing protein 0.58 DDA3937_RS00105 DNA polymerase I — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS01425 DNA-binding protein 0.51 HSERO_RS02260 DNA polymerase I low > 78
Variovorax sp. SCN45 0.56 GFF2493 YheO-like PAS domain 0.47 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Ralstonia solanacearum PSI07 0.48 RPSI07_RS06825 DNA-binding protein 0.49 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum GMI1000 0.47 RS_RS24435 DNA-binding protein 0.48 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS16625 DNA-binding protein 0.49 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS17980 DNA-binding protein 0.49 UW163_RS09920 DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS17665 PAS domain-containing protein 0.50 ABZR87_RS15680 DNA polymerase I low > 80
Serratia liquefaciens MT49 0.41 IAI46_10330 PAS domain-containing protein 0.59 IAI46_24985 DNA polymerase I low > 86
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_01875 hypothetical protein 0.57 CSW01_00560 DNA polymerase I low > 62
Rahnella sp. WP5 0.17 EX31_RS04470 transcriptional regulator 0.58 EX31_RS15905 DNA polymerase I 0.36 22
Dickeya dianthicola 67-19 0.16 HGI48_RS19440 transcriptional regulator 0.58 HGI48_RS21260 DNA polymerase I — —
Dickeya dianthicola ME23 0.16 DZA65_RS20560 transcriptional regulator 0.58 DZA65_RS22235 DNA polymerase I — —
Shewanella oneidensis MR-1 0.16 SO1402 conserved hypothetical protein (NCBI ptt file) 0.57 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.16 Shewana3_2973 YheO domain-containing protein (RefSeq) 0.57 Shewana3_4109 DNA polymerase I (RefSeq) — —
Klebsiella michiganensis M5al 0.15 BWI76_RS25905 hypothetical protein 0.57 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.15 IAI47_02055 transcriptional regulator 0.57 IAI47_00430 DNA polymerase I low > 76
Escherichia coli ECRC102 0.15 NIAGMN_15070 yheO Uncharacterized protein YheO 0.57 NIAGMN_11905 polA DNA polymerase I — —
Enterobacter sp. TBS_079 0.15 MPMX20_04239 Transcriptional regulator DauR 0.56 MPMX20_04601 DNA polymerase I low > 85
Escherichia coli BW25113 0.15 b3346 yheO orf, hypothetical protein (VIMSS) 0.57 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC101 0.15 MCAODC_07830 yheO Uncharacterized protein YheO 0.57 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli BL21 0.15 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator 0.57 ECD_03749 5 — —
Escherichia coli Nissle 1917 0.15 ECOLIN_RS19165 transcriptional regulator 0.57 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00357 Transcriptional regulator DauR 0.57 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR38 0.15 HEPCGN_16130 yheO Uncharacterized protein YheO 0.57 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC99 0.15 KEDOAH_10840 yheO Uncharacterized protein YheO 0.57 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC100 0.15 OKFHMN_17300 yheO Uncharacterized protein YheO 0.57 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC62 0.15 BNILDI_02420 yheO Uncharacterized protein YheO 0.57 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR27 0.15 NOLOHH_09100 yheO Uncharacterized protein YheO 0.57 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC98 0.15 JDDGAC_20930 yheO Uncharacterized protein YheO 0.57 JDDGAC_17775 polA DNA polymerase I — —
Erwinia tracheiphila SCR3 0.15 LU632_RS22710 transcriptional regulator 0.58 LU632_RS23870 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.15 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria 0.57 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia fergusonii Becca 0.15 EFB2_00477 Transcriptional regulator DauR 0.57 EFB2_04753 DNA polymerase I — —

Not shown: 1 genomes with orthologs for PS417_12915 only; 55 genomes with orthologs for PS417_00405 only