Conservation of cofitness between GFF362 and GFF4846 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF362 Putative inner membrane protein 1.0 GFF4846 tRNA pseudouridine synthase C (EC 4.2.1.70) 0.60 18
Enterobacter asburiae PDN3 0.94 EX28DRAFT_3895 Predicted membrane protein 0.84 EX28DRAFT_2872 Pseudouridylate synthases, 23S RNA-specific — —
Klebsiella michiganensis M5al 0.91 BWI76_RS27405 membrane protein 0.87 BWI76_RS22850 tRNA pseudouridine synthase TruC low > 92
Escherichia coli ECOR38 0.89 HEPCGN_14395 yicG UPF0126 inner membrane protein YicG 0.88 HEPCGN_19465 truC tRNA pseudouridine(65) synthase TruC low > 85
Escherichia coli Nissle 1917 0.89 ECOLIN_RS20770 trimeric intracellular cation channel family protein 0.88 ECOLIN_RS15550 tRNA pseudouridine(65) synthase TruC low > 52
Escherichia coli ECRC98 0.89 JDDGAC_19200 yicG UPF0126 inner membrane protein YicG 0.89 JDDGAC_23875 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECOR27 0.89 NOLOHH_07455 yicG UPF0126 inner membrane protein YicG 0.88 NOLOHH_12090 truC tRNA pseudouridine(65) synthase TruC low > 57
Escherichia coli BW25113 0.89 b3646 yicG orf, hypothetical protein (VIMSS) 0.89 b2791 yqcB tRNA pseudouridine synthase (NCBI) low > 76
Escherichia coli ECRC62 0.89 BNILDI_04060 yicG UPF0126 inner membrane protein YicG 0.88 BNILDI_10595 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli BL21 0.89 ECD_03503 UPF0126 family inner membrane protein 0.89 ECD_02636 tRNA(Ile1,Asp) pseudouridine(65) synthase low > 60
Escherichia coli ECRC101 0.89 MCAODC_06085 yicG UPF0126 inner membrane protein YicG 0.89 MCAODC_10735 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECRC101 0.89 OKFHMN_15575 yicG UPF0126 inner membrane protein YicG 0.89 OKFHMN_20210 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli ECRC102 0.89 NIAGMN_13335 yicG UPF0126 inner membrane protein YicG 0.89 NIAGMN_17980 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.89 OHPLBJKB_00055 hypothetical protein 0.89 OHPLBJKB_00940 tRNA pseudouridine synthase C low > 73
Escherichia coli ECRC99 0.89 KEDOAH_12570 yicG UPF0126 inner membrane protein YicG 0.89 KEDOAH_07920 truC tRNA pseudouridine(65) synthase TruC — —
Escherichia fergusonii Becca 0.89 EFB2_00142 hypothetical protein 0.88 EFB2_01126 tRNA pseudouridine synthase C low > 86
Enterobacter sp. TBS_079 0.85 MPMX20_00090 hypothetical protein 0.84 MPMX20_03661 tRNA pseudouridine synthase C low > 85
Pantoea sp. MT58 0.75 IAI47_00530 trimeric intracellular cation channel family protein 0.73 IAI47_04065 tRNA pseudouridine(65) synthase TruC low > 76
Serratia liquefaciens MT49 0.71 IAI46_24875 trimeric intracellular cation channel family protein 0.69 IAI46_20290 tRNA pseudouridine(65) synthase TruC low > 86
Rahnella sp. WP5 0.71 EX31_RS15790 trimeric intracellular cation channel family protein 0.68 EX31_RS13065 tRNA pseudouridine(65) synthase TruC low > 89
Shewanella sp. ANA-3 0.56 Shewana3_1204 putative transporter, required for glycine and L-alanine utilization (from data) 0.49 Shewana3_2824 tRNA pseudouridine synthase C (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_10555 hypothetical protein 0.61 CSW01_04555 tRNA pseudouridine(65) synthase TruC low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.53 CA265_RS15435 glycine transporter (from data) 0.38 CA265_RS09310 pseudouridylate synthase low > 88
Dickeya dianthicola 67-19 0.52 HGI48_RS10325 trimeric intracellular cation channel family protein 0.70 HGI48_RS05085 tRNA pseudouridine(65) synthase TruC low > 71
Dechlorosoma suillum PS 0.51 Dsui_0014 putative membrane protein 0.44 Dsui_3127 23S RNA-specific pseudouridylate synthase low > 51
Dickeya dianthicola ME23 0.51 DZA65_RS10800 trimeric intracellular cation channel family protein 0.70 DZA65_RS05425 tRNA pseudouridine(65) synthase TruC low > 75
Dickeya dadantii 3937 0.51 DDA3937_RS10315 trimeric intracellular cation channel family protein 0.71 DDA3937_RS05085 tRNA pseudouridine(65) synthase TruC low > 74
Shewanella loihica PV-4 0.51 Shew_1154 hypothetical protein (RefSeq) 0.46 Shew_2643 pseudouridylate synthase (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.50 HER17_RS11080 trimeric intracellular cation channel family protein 0.71 HER17_RS16365 tRNA pseudouridine(65) synthase TruC low > 75
Shewanella amazonensis SB2B 0.45 Sama_2463 hypothetical protein (RefSeq) 0.50 Sama_1131 pseudouridylate synthase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.35 HP15_2547 membrane protein containing uncharacterized protein family UPF0126 domains 0.36 HP15_1021 tRNA pseudouridine synthase C low > 73
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_06085 hypothetical protein 0.41 CA264_06180 pseudouridylate synthase low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.33 Echvi_1200 Predicted membrane protein 0.33 Echvi_3374 Pseudouridylate synthases, 23S RNA-specific low > 79
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4770.1 FIG01211391: hypothetical protein 0.31 Xcc-8004.296.1 tRNA pseudouridine synthase C (EC 4.2.1.70) low > 74
Acidovorax sp. GW101-3H11 0.25 Ac3H11_3909 Putative membrane protein 0.36 Ac3H11_3112 tRNA pseudouridine synthase C (EC 4.2.1.70) — —
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_06540 Trimeric intracellular cation channel family protein 0.38 OKGIIK_13270 pseudouridylate synthase low > 52
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS05500 trimeric intracellular cation channel family protein 0.37 ABZR86_RS13460 pseudouridine synthase low > 74

Not shown: 32 genomes with orthologs for GFF362 only; 8 genomes with orthologs for GFF4846 only