Conservation of cofitness between PS417_20020 and PS417_24335 in Pseudomonas simiae WCS417

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_20020 cobalamin synthase 1.0 PS417_24335 50S rRNA methyltransferase 0.27 19
Pseudomonas fluorescens SBW25 0.82 PFLU_RS21985 adenosylcobinamide-GDP ribazoletransferase 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS21985 adenosylcobinamide-GDP ribazoletransferase 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas sp. RS175 0.75 PFR28_03200 Adenosylcobinamide-GDP ribazoletransferase 0.86 PFR28_03798 Ribosomal RNA large subunit methyltransferase G low > 88
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_4234 Cobalamin synthase 0.90 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_3672 cobalamin-5'-phosphate synthase 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_3672 cobalamin-5'-phosphate synthase 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.67 AO353_02595 cobalamin synthase 0.86 AO353_13950 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_19180 cobalamin synthase 0.86 AO356_15650 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_5746 Cobalamin synthase 0.86 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_3715 Cobalamin synthase 0.88 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas putida KT2440 0.53 PP_1681 cobalamin 5'-phosphate synthase / Cobalamin synthase 0.80 PP_4648 Ribosomal RNA large subunit methyltransferase G low > 96
Pseudomonas sp. S08-1 0.46 OH686_04945 cobalamin 5'-phosphate synthase 0.74 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.42 Psest_3004 cobalamin 5'-phosphate synthase/cobalamin synthase 0.72 Psest_3440 16S RNA G1207 methylase RsmC low > 67
Rahnella sp. WP5 0.23 EX31_RS09930 adenosylcobinamide-GDP ribazoletransferase 0.33 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 89
Escherichia coli ECRC101 0.22 OKFHMN_25130 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC102 0.22 NIAGMN_22635 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC99 0.22 KEDOAH_02980 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC98 0.22 JDDGAC_29260 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC101 0.22 MCAODC_20260 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC62 0.22 BNILDI_14870 cobS adenosylcobinamide-GDP ribazoletransferase 0.35 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECOR27 0.21 NOLOHH_16040 cobS adenosylcobinamide-GDP ribazoletransferase 0.36 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_01716 Adenosylcobinamide-GDP ribazoletransferase 0.35 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G low > 73
Escherichia coli Nissle 1917 0.21 ECOLIN_RS11625 adenosylcobinamide-GDP ribazoletransferase 0.36 ECOLIN_RS17790 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli BW25113 0.21 b1992 cobS cobalamin synthase (NCBI) 0.35 b3084 ygjO putative enzyme (VIMSS) low > 76
Escherichia fergusonii Becca 0.21 EFB2_01897 Adenosylcobinamide-GDP ribazoletransferase 0.36 EFB2_00728 Ribosomal RNA large subunit methyltransferase G low > 86
Escherichia coli ECOR38 0.21 HEPCGN_03465 cobS adenosylcobinamide-GDP ribazoletransferase 0.35 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF3968 Cobalamin synthase (EC 2.7.8.26) 0.36 GFF3186 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 78
Escherichia coli BL21 0.21 ECD_01901 cobalamin synthase 0.35 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent low > 60
Klebsiella michiganensis M5al 0.20 BWI76_RS18750 adenosylcobinamide-GDP ribazoletransferase 0.34 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase — —
Shewanella oneidensis MR-1 0.18 SO1036 cobS cobalamin 5'-phosphate synthase (NCBI ptt file) 0.30 SO1097 conserved hypothetical protein (NCBI ptt file) 0.36 50
Shewanella loihica PV-4 0.17 Shew_0715 cobalamin 5'-phosphate synthase (RefSeq) 0.30 Shew_2886 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_06265 adenosylcobinamide-GDP ribazoletransferase 0.33 CSW01_11685 ribosomal RNA large subunit methyltransferase G low > 62
Shewanella sp. ANA-3 0.16 Shewana3_3277 cobS cobalamin synthase (RefSeq) 0.31 Shewana3_0932 methyltransferase small (RefSeq) low > 73
Shewanella amazonensis SB2B 0.16 Sama_0763 cobalamin 5'-phosphate synthase (RefSeq) 0.33 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62

Not shown: 28 genomes with orthologs for PS417_20020 only; 11 genomes with orthologs for PS417_24335 only