Conservation of cofitness between PS417_12915 and PS417_21575 in Pseudomonas simiae WCS417

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_12915 DNA-binding protein 1.0 PS417_21575 chemotaxis protein 0.24 4
Pseudomonas fluorescens SBW25 0.90 PFLU_RS13585 DNA-binding protein 0.98 PFLU_RS23185 protein-glutamate O-methyltransferase CheR low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS13585 DNA-binding protein 0.98 PFLU_RS23185 protein-glutamate O-methyltransferase CheR low > 109
Cupriavidus basilensis FW507-4G11 0.74 RR42_RS11120 DNA-binding protein 0.22 RR42_RS35795 chemotaxis protein CheR low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_38 YheO-like PAS domain 0.23 Ac3H11_1423 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) low > 79
Pectobacterium carotovorum WPP14 0.69 HER17_RS09825 helix-turn-helix transcriptional regulator 0.22 HER17_RS08115 protein-glutamate O-methyltransferase CheR low > 75
Dickeya dadantii 3937 0.68 DDA3937_RS08080 PAS domain-containing protein 0.23 DDA3937_RS13530 protein-glutamate O-methyltransferase CheR low > 74
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS01425 DNA-binding protein 0.22 HSERO_RS10115 chemotaxis protein CheR low > 78
Variovorax sp. SCN45 0.56 GFF2493 YheO-like PAS domain 0.23 GFF5765 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) low > 127
Ralstonia solanacearum PSI07 0.48 RPSI07_RS06825 DNA-binding protein 0.21 RPSI07_RS06240 chemotaxis protein CheR low > 81
Ralstonia solanacearum GMI1000 0.47 RS_RS24435 DNA-binding protein 0.21 RS_RS23905 chemotaxis protein CheR low > 80
Ralstonia solanacearum UW163 0.46 UW163_RS17980 DNA-binding protein 0.20 UW163_RS21745 chemotaxis protein CheR — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS16625 DNA-binding protein 0.20 RALBFv3_RS17405 chemotaxis protein CheR low > 76
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS17665 PAS domain-containing protein 0.20 ABZR87_RS17980 CheR family methyltransferase low > 80
Serratia liquefaciens MT49 0.41 IAI46_10330 PAS domain-containing protein 0.22 IAI46_16020 protein-glutamate O-methyltransferase CheR low > 86
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU2206 conserved hypothetical protein (TIGR) 0.27 DVU2076 cheR-2 chemotaxis protein methyltransferase (TIGR) low > 55
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_01875 hypothetical protein 0.49 CSW01_11230 chemotaxis protein methyltransferase 1 low > 62
Rahnella sp. WP5 0.17 EX31_RS04470 transcriptional regulator 0.21 EX31_RS11365 protein-glutamate O-methyltransferase CheR low > 89
Dickeya dianthicola 67-19 0.16 HGI48_RS19440 transcriptional regulator 0.23 HGI48_RS13575 protein-glutamate O-methyltransferase CheR low > 71
Dickeya dianthicola ME23 0.16 DZA65_RS20560 transcriptional regulator 0.23 DZA65_RS14060 protein-glutamate O-methyltransferase CheR low > 75
Shewanella oneidensis MR-1 0.16 SO1402 conserved hypothetical protein (NCBI ptt file) 0.52 SO3251 cheR-2 chemotaxis protein methyltransferase CheR (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.16 Shewana3_2973 YheO domain-containing protein (RefSeq) 0.53 Shewana3_1320 MCP methyltransferase, CheR-type (RefSeq) low > 73
Pantoea sp. MT58 0.15 IAI47_02055 transcriptional regulator 0.22 IAI47_08325 protein-glutamate O-methyltransferase CheR low > 76
Escherichia coli ECRC99 0.15 KEDOAH_10840 yheO Uncharacterized protein YheO 0.23 KEDOAH_01960 cheR protein-glutamate O-methyltransferase CheR — —
Escherichia coli ECOR27 0.15 NOLOHH_09100 yheO Uncharacterized protein YheO 0.23 NOLOHH_16585 cheR protein-glutamate O-methyltransferase CheR low > 75
Escherichia coli ECRC98 0.15 JDDGAC_20930 yheO Uncharacterized protein YheO 0.23 JDDGAC_00720 cheR protein-glutamate O-methyltransferase CheR low > 86
Escherichia coli ECRC101 0.15 MCAODC_07830 yheO Uncharacterized protein YheO 0.23 MCAODC_19260 cheR protein-glutamate O-methyltransferase CheR low > 87
Enterobacter sp. TBS_079 0.15 MPMX20_04239 Transcriptional regulator DauR 0.23 MPMX20_02788 Chemotaxis protein methyltransferase low > 85
Erwinia tracheiphila SCR3 0.15 LU632_RS22710 transcriptional regulator 0.21 LU632_RS13530 cheR protein-glutamate O-methyltransferase CheR low > 74
Enterobacter asburiae PDN3 0.15 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria 0.23 EX28DRAFT_0672 Methylase of chemotaxis methyl-accepting proteins low > 76
Escherichia coli ECRC62 0.15 BNILDI_02420 yheO Uncharacterized protein YheO 0.23 BNILDI_15375 cheR protein-glutamate O-methyltransferase CheR low > 75
Escherichia coli BW25113 0.15 b3346 yheO orf, hypothetical protein (VIMSS) 0.23 b1884 cheR chemotaxis regulator, protein-glutamate methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.15 OHPLBJKB_00357 Transcriptional regulator DauR 0.23 OHPLBJKB_01844 Chemotaxis protein methyltransferase low > 73
Escherichia fergusonii Becca 0.15 EFB2_00477 Transcriptional regulator DauR 0.22 EFB2_02059 Chemotaxis protein methyltransferase low > 86
Escherichia coli ECOR38 0.15 HEPCGN_16130 yheO Uncharacterized protein YheO 0.22 HEPCGN_04565 cheR protein-glutamate O-methyltransferase CheR low > 87
Escherichia coli BL21 0.15 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator 0.23 ECD_01855 chemotaxis regulator, protein-glutamate methyltransferase — —
Escherichia coli ECRC100 0.15 OKFHMN_17300 yheO Uncharacterized protein YheO 0.23 OKFHMN_26145 cheR protein-glutamate O-methyltransferase CheR low > 80
Escherichia coli ECRC102 0.15 NIAGMN_15070 yheO Uncharacterized protein YheO 0.23 NIAGMN_01915 cheR protein-glutamate O-methyltransferase CheR — —
Escherichia coli Nissle 1917 0.15 ECOLIN_RS19165 transcriptional regulator 0.23 ECOLIN_RS10760 protein-glutamate O-methyltransferase CheR — —

Not shown: 2 genomes with orthologs for PS417_12915 only; 41 genomes with orthologs for PS417_21575 only