Conservation of cofitness between PS417_27750 and PS417_21480 in Pseudomonas simiae WCS417

25 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27750 transcriptional regulator 1.0 PS417_21480 23S rRNA pseudouridylate synthase 0.22 12
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29425 cupin domain-containing protein 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 38
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29425 cupin domain-containing protein 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_2130 FIG00953403: hypothetical protein 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas sp. RS175 0.89 PFR28_04408 hypothetical protein 0.92 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_4382 FIG00953403: hypothetical protein 0.93 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.23 56
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_09200 transcriptional regulator 0.94 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_12575 transcriptional regulator 0.93 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_803 FIG00953403: hypothetical protein 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas putida KT2440 0.85 PP_5279 conserved protein of unknown function 0.86 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_0226 Protein of unknown function DUF861 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_0226 Protein of unknown function DUF861 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas sp. S08-1 0.81 OH686_13640 Predicted enzyme of the cupin superfamily 0.81 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS32850 transcriptional regulator 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Shewanella sp. ANA-3 0.62 Shewana3_3108 protein of unknown function DUF861, cupin_3 (RefSeq) 0.52 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Shewanella loihica PV-4 0.62 Shew_0964 protein of unknown function DUF861, cupin_3 (RefSeq) 0.52 Shew_1594 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.61 Sama_2651 hypothetical protein (RefSeq) 0.53 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Azospirillum sp. SherDot2 0.40 MPMX19_00430 hypothetical protein 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Azospirillum brasilense Sp245 0.39 AZOBR_RS00120 cupin 0.22 AZOBR_RS06905 pseudouridine synthase low > 97
Agrobacterium fabrum C58 0.37 Atu1253 hypothetical protein 0.29 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Rhizobium sp. OAE497 0.36 ABIE40_RS07040 cupin domain-containing protein 0.28 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS15290 cupin 0.42 RR42_RS14155 pseudouridine synthase low > 128
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS11025 cupin 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Dinoroseobacter shibae DFL-12 0.32 Dshi_1826 protein of unknown function DUF861 cupin_3 (RefSeq) 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) low > 64
Dechlorosoma suillum PS 0.27 Dsui_0795 putative enzyme of the cupin superfamily 0.44 Dsui_2437 pseudouridine synthase, RluA family low > 51
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS23585 cupin domain-containing protein 0.45 QEN71_RS04500 RluA family pseudouridine synthase — —

Not shown: 1 genomes with orthologs for PS417_27750 only; 59 genomes with orthologs for PS417_21480 only