Conservation of cofitness between GFF2172 and GFF4099 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2172 Uracil permease 1.0 GFF4099 Aliphatic amidase AmiE (EC 3.5.1.4) 0.51 19
Klebsiella michiganensis M5al 0.95 BWI76_RS20940 uracil/xanthine transporter 0.87 BWI76_RS05465 amidohydrolase low > 92
Enterobacter sp. TBS_079 0.95 MPMX20_03351 Uracil permease 0.88 MPMX20_00909 Omega-amidase YafV low > 85
Escherichia coli Nissle 1917 0.95 ECOLIN_RS14180 uracil permease 0.85 ECOLIN_RS01735 2-oxoglutaramate amidase low > 55
Escherichia coli ECRC62 0.95 BNILDI_12280 uraA uracil permease 0.86 BNILDI_00360 yafV 2-oxoglutaramate amidase low > 75
Escherichia coli ECRC102 0.95 NIAGMN_19590 uraA uracil permease 0.86 NIAGMN_07650 yafV 2-oxoglutaramate amidase — —
Escherichia coli ECRC100 0.95 OKFHMN_21820 uraA uracil permease 0.86 OKFHMN_09790 yafV 2-oxoglutaramate amidase low > 80
Escherichia coli ECRC101 0.95 MCAODC_12350 uraA uracil permease 0.86 MCAODC_00310 yafV 2-oxoglutaramate amidase low > 87
Escherichia coli ECRC98 0.95 JDDGAC_25765 uraA uracil permease 0.86 JDDGAC_13415 yafV 2-oxoglutaramate amidase low > 86
Escherichia fergusonii Becca 0.95 EFB2_01401 Uracil permease 0.85 EFB2_03798 Omega-amidase YafV low > 86
Escherichia coli ECRC99 0.95 KEDOAH_06400 uraA uracil permease 0.86 KEDOAH_18365 yafV 2-oxoglutaramate amidase — —
Escherichia coli ECOR27 0.95 NOLOHH_13470 uraA uracil permease 0.86 NOLOHH_02165 yafV 2-oxoglutaramate amidase 0.51 64
Escherichia coli BL21 0.95 ECD_02389 uracil permease 0.85 ECD_00214 putative NAD(P)-binding C-N hydrolase family amidase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_01229 Uracil permease 0.85 OHPLBJKB_03420 Omega-amidase YafV low > 73
Escherichia coli BW25113 0.95 b2497 uraA uracil transporter (NCBI) 0.86 b0219 yafV predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) low > 76
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0171 uracil-xanthine permease 0.87 EX28DRAFT_2669 Predicted amidohydrolase low > 76
Escherichia coli ECOR38 0.95 HEPCGN_20985 uraA uracil permease 0.87 HEPCGN_07895 yafV 2-oxoglutaramate amidase low > 87
Pantoea sp. MT58 0.90 IAI47_05190 uracil permease 0.76 IAI47_15230 amidohydrolase low > 76
Serratia liquefaciens MT49 0.89 IAI46_18875 uracil permease 0.71 IAI46_04295 amidohydrolase low > 86
Pectobacterium carotovorum WPP14 0.88 HER17_RS15455 uracil permease 0.75 HER17_RS04570 amidohydrolase low > 75
Dickeya dadantii 3937 0.87 DDA3937_RS06035 uracil permease 0.74 DDA3937_RS16630 amidohydrolase low > 74
Rahnella sp. WP5 0.86 EX31_RS22705 uracil permease 0.72 EX31_RS21070 amidohydrolase low > 89
Dickeya dianthicola ME23 0.85 DZA65_RS06430 uracil permease 0.72 DZA65_RS17790 amidohydrolase low > 75
Dickeya dianthicola 67-19 0.85 HGI48_RS06080 uracil permease 0.72 HGI48_RS16700 amidohydrolase low > 71
Desulfovibrio vulgaris Miyazaki F 0.60 DvMF_0910 uracil-xanthine permease (RefSeq) 0.10 DvMF_0653 N-carbamoylputrescine amidase (RefSeq) low > 51
Pseudomonas putida KT2440 0.34 PP_0745 putative uracil permease 0.47 PP_0859 putative ketoglutaramate omega-amidase low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0968 Xanthine/uracil permease family 0.46 Psyr_1254 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0968 Xanthine/uracil permease family 0.46 Psyr_1254 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2933 Uracil permease 0.45 Pf1N1B4_848 Aliphatic amidase AmiE (EC 3.5.1.4) low > 87
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_14850 uracil transporter 0.48 AO353_15920 carbon-nitrogen hydrolase low > 101
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1596 Uracil permease 0.46 PfGW456L13_4855 Aliphatic amidase AmiE (EC 3.5.1.4) low > 87
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS04480 uracil-xanthine permease 0.46 PFLU_RS24770 amidohydrolase low > 109
Pseudomonas simiae WCS417 0.33 PS417_04430 uracil transporter 0.46 PS417_23115 carbon-nitrogen hydrolase low > 88
Pseudomonas fluorescens SBW25 0.33 PFLU_RS04480 uracil-xanthine permease 0.46 PFLU_RS24770 amidohydrolase low > 109
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5234 Uracil permease 0.47 Pf6N2E2_3172 Aliphatic amidase AmiE (EC 3.5.1.4) low > 103
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_16560 uracil transporter 0.47 AO356_06560 carbon-nitrogen hydrolase low > 104
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS08125 uracil-xanthine permease family protein 0.46 HMPREF1078_RS14090 amidohydrolase low > 61
Pseudomonas stutzeri RCH2 0.32 Psest_1119 uracil-xanthine permease 0.44 Psest_1269 Predicted amidohydrolase low > 67
Pseudomonas sp. S08-1 0.31 OH686_17980 Uracil permease or Uracil:proton symporter UraA 0.46 OH686_17560 Aliphatic amidase AmiE low > 80
Pseudomonas sp. RS175 0.31 PFR28_03642 Uracil permease 0.46 PFR28_00303 Omega-amidase YafV low > 88
Bacteroides ovatus ATCC 8483 0.31 BACOVA_02389 putative permease 0.44 BACOVA_00412 hydrolase, carbon-nitrogen family low > 94
Bacteroides thetaiotaomicron VPI-5482 0.31 BT0686 putative uracil permease (uracil transporter) (NCBI ptt file) 0.44 BT0259 putative amidohydrolase (NCBI ptt file) low > 81

Not shown: 28 genomes with orthologs for GFF2172 only; 14 genomes with orthologs for GFF4099 only