Conservation of cofitness between GFF668 and GFF4068 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 1.0 GFF4068 IcmF-related protein 0.45 17
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.21 EX28DRAFT_0790 type VI secretion protein IcmF low > 76
Enterobacter sp. TBS_079 0.84 MPMX20_01400 Histidine ammonia-lyase 0.21 MPMX20_02678 hypothetical protein low > 85
Pseudomonas simiae WCS417 0.78 PS417_01750 histidine ammonia-lyase 0.18 PS417_27920 type VI secretion protein IcmF low > 88
Pseudomonas fluorescens SBW25 0.78 PFLU_RS01805 histidine ammonia-lyase 0.18 PFLU_RS29600 type VI secretion system membrane subunit TssM low > 109
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS01805 histidine ammonia-lyase 0.18 PFLU_RS29600 type VI secretion system membrane subunit TssM low > 109
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS14640 histidine ammonia-lyase 0.43 RR42_RS03585 type VI secretion protein VasK low > 128
Pseudomonas sp. S08-1 0.77 OH686_16755 histidine ammonia-lyase 0.12 OH686_12780 T6SS component TssM (IcmF/VasK) low > 80
Pseudomonas sp. RS175 0.77 PFR28_04971 Histidine ammonia-lyase 0.17 PFR28_04450 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_09600 histidine ammonia-lyase 0.17 AO356_12315 type VI secretion protein IcmF low > 104
Pseudomonas putida KT2440 0.77 PP_5032 Histidine ammonia-lyase 0.08 PP_4071 conserved membrane protein of unknown function low > 96
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.17 Pf6N2E2_4341 IcmF-related protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_12270 histidine ammonia-lyase 0.17 AO353_09545 type VI secretion protein IcmF low > 101
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.18 Pf1N1B4_2070 IcmF-related protein low > 87
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_06080 histidine ammonia-lyase 0.11 CSW01_14615 type VI secretion system membrane subunit TssM low > 62
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS23515 histidine ammonia-lyase 0.41 QEN71_RS34515 type VI secretion system membrane subunit TssM low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04873 histidine ammonia-lyase 0.09 H281DRAFT_05373 type VI secretion system protein ImpL low > 103
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.42 BPHYT_RS04540 type VI secretion protein VasK low > 109
Paraburkholderia graminis OAS925 0.57 ABIE53_001729 histidine ammonia-lyase 0.13 ABIE53_003925 type VI secretion system protein ImpL low > 113
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01025 histidine ammonia-lyase 0.39 ABZR87_RS13865 type VI secretion system membrane subunit TssM low > 80
Variovorax sp. OAS795 0.55 ABID97_RS03420 histidine ammonia-lyase 0.40 ABID97_RS09000 type VI secretion system membrane subunit TssM low > 91
Dickeya dadantii 3937 0.54 DDA3937_RS14995 histidine ammonia-lyase 0.09 DDA3937_RS07080 type VI secretion system membrane subunit TssM low > 74
Variovorax sp. SCN45 0.54 GFF6409 Histidine ammonia-lyase (EC 4.3.1.3) 0.25 GFF6352 T6SS component TssM (IcmF/VasK) low > 127
Dickeya dianthicola 67-19 0.54 HGI48_RS15090 histidine ammonia-lyase 0.09 HGI48_RS08010 type VI secretion system membrane subunit TssM low > 71
Pantoea sp. MT58 0.54 IAI47_13275 histidine ammonia-lyase 0.20 IAI47_11680 type VI secretion system membrane subunit TssM low > 76
Dickeya dianthicola ME23 0.53 DZA65_RS15835 histidine ammonia-lyase 0.09 DZA65_RS08605 type VI secretion system membrane subunit TssM 0.39 2
Bosea sp. OAE506 0.48 ABIE41_RS23645 histidine ammonia-lyase 0.13 ABIE41_RS14300 type VI secretion system membrane subunit TssM low > 77
Agrobacterium fabrum C58 0.48 Atu3933 histidine ammonia-lyase 0.15 Atu4332 IcmF family protein low > 89
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS22680 histidine ammonia-lyase 0.09 HSERO_RS03785 type VI secretion protein VasK low > 78
Pseudomonas stutzeri RCH2 0.20 Psest_3695 Histidine ammonia-lyase 0.11 Psest_4246 type VI secretion protein IcmF 0.35 19

Not shown: 46 genomes with orthologs for GFF668 only; 12 genomes with orthologs for GFF4068 only