Conservation of cofitness between Psest_2811 and Psest_3734 in Pseudomonas stutzeri RCH2

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2811 Uncharacterized conserved protein 1.0 Psest_3734 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis 0.34 12
Pseudomonas sp. RS175 0.76 PFR28_00423 tRNA pseudouridine synthase D 0.74 PFR28_04349 Glyoxalase ElbB low > 88
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.76 Pf6N2E2_4449 Sigma cross-reacting protein 27A low > 103
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4679 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.73 PfGW456L13_870 Sigma cross-reacting protein 27A low > 87
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3111 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.73 Pf1N1B4_2204 Sigma cross-reacting protein 27A low > 87
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05905 pseudouridine synthase 0.75 AO356_12875 isoprenoid biosynthesis protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_16595 pseudouridine synthase 0.69 AO353_08905 isoprenoid biosynthesis protein low > 101
Pseudomonas simiae WCS417 0.74 PS417_06345 pseudouridine synthase 0.72 PS417_27455 isoprenoid biosynthesis protein low > 88
Pseudomonas fluorescens SBW25 0.74 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.71 PFLU_RS29115 isoprenoid biosynthesis glyoxalase ElbB low > 109
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.71 PFLU_RS29115 isoprenoid biosynthesis glyoxalase ElbB low > 109
Pseudomonas putida KT2440 0.74 PP_1619 tRNA pseudouridine synthase D 0.74 PP_5220 putative hydrolase low > 96
Pseudomonas sp. S08-1 0.73 OH686_18165 tRNA pseudouridine(13) synthase 0.70 OH686_13980 Enhancing lycopene biosynthesis protein 2 low > 80
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.69 Psyr_0290 ThiJ/PfpI low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.69 Psyr_0290 ThiJ/PfpI low > 86
Alteromonas macleodii MIT1002 0.34 MIT1002_00629 tRNA pseudouridine synthase D 0.52 MIT1002_00015 Sigma cross-reacting protein 27A low > 70
Dickeya dianthicola 67-19 0.32 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD 0.53 HGI48_RS01575 isoprenoid biosynthesis glyoxalase ElbB low > 71
Dickeya dianthicola ME23 0.32 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD 0.53 DZA65_RS01650 isoprenoid biosynthesis glyoxalase ElbB low > 75
Dickeya dadantii 3937 0.31 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD 0.53 DDA3937_RS01680 isoprenoid biosynthesis glyoxalase ElbB low > 74
Shewanella amazonensis SB2B 0.31 Sama_1040 pseudouridylate synthase (RefSeq) 0.53 Sama_0094 isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq) low > 62
Shewanella loihica PV-4 0.31 Shew_1209 pseudouridylate synthase (RefSeq) 0.51 Shew_3713 isoprenoid biosynthesis protein (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.30 HER17_RS04335 tRNA pseudouridine(13) synthase TruD 0.56 HER17_RS19895 isoprenoid biosynthesis glyoxalase ElbB low > 75
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_2295 Uncharacterized conserved protein 0.56 B158DRAFT_0508 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis low > 40
Escherichia coli BL21 0.29 ECD_02595 tRNA(Glu) pseudouridine(13) synthase 0.55 ECD_03074 isoprenoid biosynthesis protein with amidotransferase-like domain low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00988 tRNA pseudouridine synthase D 0.55 OHPLBJKB_00491 Glyoxalase ElbB low > 73
Escherichia coli ECRC62 0.29 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD 0.55 BNILDI_01830 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Shewanella oneidensis MR-1 0.29 SO3436 conserved hypothetical protein (NCBI ptt file) 0.52 SO4670 elbB enhancing lycopene biosynthesis protein (NCBI ptt file) low > 76
Escherichia coli BW25113 0.29 b2745 truD tRNA pseudouridine synthase D (NCBI) 0.55 b3209 yhbL sigma cross-reacting protein 27A (SCRP-27A) (VIMSS) low > 76
Escherichia coli Nissle 1917 0.29 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD 0.54 ECOLIN_RS18460 isoprenoid biosynthesis glyoxalase ElbB low > 52
Escherichia coli ECOR38 0.29 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD 0.54 HEPCGN_16780 elbB isoprenoid biosynthesis glyoxalase ElbB low > 85
Escherichia coli ECOR27 0.29 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD 0.55 NOLOHH_09705 elbB isoprenoid biosynthesis glyoxalase ElbB low > 57
Escherichia coli ECRC98 0.29 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD 0.54 JDDGAC_21530 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Escherichia coli ECRC99 0.29 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD 0.54 KEDOAH_10245 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Escherichia coli ECRC102 0.29 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD 0.54 NIAGMN_15665 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_02815 tRNA pseudouridine(13) synthase TruD 0.55 CSW01_17270 isoprenoid biosynthesis protein ElbB low > 62
Escherichia fergusonii Becca 0.29 EFB2_01165 tRNA pseudouridine synthase D 0.54 EFB2_00614 Glyoxalase ElbB low > 86
Escherichia coli ECRC101 0.29 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD 0.54 MCAODC_08425 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Escherichia coli ECRC101 0.29 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD 0.54 OKFHMN_17905 elbB isoprenoid biosynthesis glyoxalase ElbB — —
Serratia liquefaciens MT49 0.29 IAI46_03765 tRNA pseudouridine(13) synthase TruD 0.56 IAI46_22330 isoprenoid biosynthesis glyoxalase ElbB low > 86
Shewanella sp. ANA-3 0.29 Shewana3_1120 tRNA pseudouridine synthase D, TruD (RefSeq) 0.54 Shewana3_4108 isoprenoid biosynthesis protein with amidotransferase-like domain (RefSeq) low > 73
Enterobacter sp. TBS_079 0.29 MPMX20_03631 tRNA pseudouridine synthase D 0.56 MPMX20_04114 Glyoxalase ElbB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.55 GFF2953 Sigma cross-reacting protein 27A low > 78
Enterobacter asburiae PDN3 0.29 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family 0.54 EX28DRAFT_3262 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis low > 76
Klebsiella michiganensis M5al 0.28 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.55 BWI76_RS25295 glutamine amidotransferase low > 92

Not shown: 12 genomes with orthologs for Psest_2811 only; 4 genomes with orthologs for Psest_3734 only