Conservation of cofitness between GFF3642 and GFF3397 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3642 Electron transport complex protein RnfE 1.0 GFF3397 Transcription-repair coupling factor 0.81 17
Escherichia fergusonii Becca 0.85 EFB2_02360 Ion-translocating oxidoreductase complex subunit E 0.96 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC99 0.84 KEDOAH_00575 rsxE electron transport complex subunit RsxE 0.96 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.84 BNILDI_16840 rsxE electron transport complex subunit RsxE 0.96 BNILDI_19160 mfd transcription-repair coupling factor 0.90 6
Escherichia coli ECRC101 0.84 MCAODC_17880 rsxE electron transport complex subunit RsxE 0.96 MCAODC_22830 mfd transcription-repair coupling factor 0.60 63
Escherichia coli ECRC102 0.84 NIAGMN_00535 rsxE electron transport complex subunit RsxE 0.96 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 0.84 JDDGAC_02120 rsxE electron transport complex subunit RsxE 0.96 JDDGAC_07130 mfd transcription-repair coupling factor 0.83 47
Escherichia coli ECRC100 0.84 OKFHMN_27530 rsxE electron transport complex subunit RsxE 0.96 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Klebsiella michiganensis M5al 0.83 BWI76_RS16380 electron transport complex subunit RsxE 0.94 BWI76_RS11205 transcription-repair coupling factor — —
Escherichia coli BL21 0.82 ECD_01602 SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase 0.96 ECD_01110 transcription-repair coupling factor — —
Escherichia coli BW25113 0.82 b1632 rsxE NADH-ubiquinone oxidoreductase (NCBI) 0.96 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02094 Electron transport complex subunit RsxE 0.96 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECOR27 0.81 NOLOHH_18050 rsxE electron transport complex subunit RsxE 0.96 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli ECOR38 0.81 HEPCGN_05915 rsxE electron transport complex subunit RsxE 0.96 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Enterobacter sp. TBS_079 0.80 MPMX20_02006 Ion-translocating oxidoreductase complex subunit E 0.93 MPMX20_01795 Transcription-repair-coupling factor low > 85
Pectobacterium carotovorum WPP14 0.80 HER17_RS10855 electron transport complex subunit E 0.84 HER17_RS08775 transcription-repair coupling factor low > 75
Enterobacter asburiae PDN3 0.80 EX28DRAFT_1628 electron transport complex, RnfABCDGE type, E subunit 0.94 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Dickeya dadantii 3937 0.78 DDA3937_RS10550 electron transport complex subunit E 0.82 DDA3937_RS13000 transcription-repair coupling factor — —
Dickeya dianthicola ME23 0.77 DZA65_RS11030 electron transport complex subunit E 0.82 DZA65_RS13530 transcription-repair coupling factor 0.37 63
Dickeya dianthicola 67-19 0.76 HGI48_RS10550 electron transport complex subunit E 0.82 HGI48_RS13065 transcription-repair coupling factor low > 71
Rahnella sp. WP5 0.75 EX31_RS06595 electron transport complex subunit E 0.82 EX31_RS24520 transcription-repair coupling factor low > 89
Erwinia tracheiphila SCR3 0.74 LU632_RS11310 electron transport complex subunit E 0.85 LU632_RS14730 mfd transcription-repair coupling factor — —
Pantoea sp. MT58 0.70 IAI47_10470 electron transport complex subunit E 0.83 IAI47_11975 transcription-repair coupling factor low > 76
Serratia liquefaciens MT49 0.69 IAI46_11460 electron transport complex subunit E 0.83 IAI46_10320 transcription-repair coupling factor low > 86
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_05150 electron transport complex subunit E 0.64 CSW01_09445 transcription-repair coupling factor — —
Shewanella sp. ANA-3 0.63 Shewana3_2173 electron transport complex RsxE subunit (RefSeq) 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) — —
Shewanella oneidensis MR-1 0.61 SO2513 NqrDE/RnfAE family protein (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.61 Sama_1835 electron transport complex RsxE subunit (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) — —
Shewanella loihica PV-4 0.60 Shew_2071 SoxR-reducing system protein RsxE (RefSeq) 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) — —
Alteromonas macleodii MIT1002 0.57 MIT1002_01252 Electron transport complex protein RnfE 0.58 MIT1002_01646 Transcription-repair-coupling factor — —
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_2366 electron transport complex, RnfABCDGE type, E subunit 0.51 B158DRAFT_1800 transcription-repair coupling factor — —
Marinobacter adhaerens HP15 0.47 HP15_1286 SoxR-reducing system protein RsxE 0.53 HP15_2257 transcription-repair-coupling factor low > 73
Pseudomonas stutzeri RCH2 0.46 Psest_3117 electron transport complex, RnfABCDGE type, E subunit 0.54 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Magnetospirillum magneticum AMB-1 0.41 AMB_RS13175 electron transport complex subunit E 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Desulfovibrio vulgaris Hildenborough JW710 0.38 DVU2795 nqr4 NADH:quinone oxidoreductase subunit RnfE (Shelley Haveman) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) low > 55
Dechlorosoma suillum PS 0.34 Dsui_2984 electron transport complex, RnfABCDGE type, E subunit 0.44 Dsui_2385 transcription-repair coupling factor Mfd — —
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1754 Electron transport complex protein RnfE 0.53 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_04080 NADH:quinone oxidoreductase 0.53 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N1B4 0.13 Pf1N1B4_738 Electron transport complex protein RnfE 0.53 Pf1N1B4_3916 Transcription-repair coupling factor low > 87

Not shown: 9 genomes with orthologs for GFF3642 only; 48 genomes with orthologs for GFF3397 only