Conservation of cofitness between PGA1_c26780 and PGA1_c32950 in Phaeobacter inhibens DSM 17395

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c26780 cold shock protein CspA 1.0 PGA1_c32950 tRNA pseudouridine synthase B 0.51 1
Brevundimonas sp. GW460-12-10-14-LB2 0.74 A4249_RS00175 cold-shock protein 0.45 A4249_RS13345 tRNA pseudouridine(55) synthase TruB — —
Agrobacterium fabrum C58 0.72 Atu0106 cold shock protein 0.46 Atu0085 tRNA pseudouridine 55 synthase low > 89
Caulobacter crescentus NA1000 0.71 CCNA_02705 cold shock protein CspC 0.47 CCNA_00035 tRNA pseudouridine synthase B — —
Caulobacter crescentus NA1000 Δfur 0.71 CCNA_02705 cold shock protein CspC 0.47 CCNA_00035 tRNA pseudouridine synthase B — —
Magnetospirillum magneticum AMB-1 0.70 AMB_RS16570 cold-shock protein 0.44 AMB_RS20810 tRNA pseudouridine(55) synthase TruB — —
Rhodospirillum rubrum S1H 0.68 Rru_A1521 Cold-shock DNA-binding domain protein (NCBI) 0.41 Rru_A3783 tRNA pseudouridine synthase B (NCBI) — —
Sinorhizobium meliloti 1021 0.67 SMc01428 cold shock transcription regulator protein 0.45 SMc00321 tRNA pseudouridine synthase B low > 103
Rhodopseudomonas palustris CGA009 0.65 TX73_019030 cold-shock protein 0.44 TX73_002255 tRNA pseudouridine(55) synthase TruB — —
Paraburkholderia graminis OAS925 0.59 ABIE53_004735 CspA family cold shock protein 0.29 ABIE53_001832 tRNA pseudouridine55 synthase low > 113
Alteromonas macleodii MIT1002 0.56 MIT1002_01248 Cold shock-like protein CspG 0.30 MIT1002_01773 tRNA pseudouridine synthase B low > 70
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS07090 cold-shock protein 0.25 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_02677 Cold shock-like protein CspG 0.33 OHPLBJKB_00534 tRNA pseudouridine synthase B — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS05165 cold shock protein CspG 0.33 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB — —
Escherichia fergusonii Becca 0.53 EFB2_03089 Cold shock-like protein CspG 0.33 EFB2_00657 tRNA pseudouridine synthase B low > 86
Escherichia coli ECRC102 0.53 NIAGMN_23120 cspG cold shock protein CspG 0.33 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli BW25113 0.53 b0990 cspG DNA-binding transcriptional regulator (NCBI) 0.33 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia coli ECOR38 0.53 HEPCGN_23410 cspG cold shock protein CspG 0.33 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.53 OKFHMN_04730 cspG cold shock protein CspG 0.33 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR27 0.53 NOLOHH_21625 cspG cold shock protein CspG 0.33 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC101 0.53 MCAODC_24115 cspG cold shock protein CspG 0.33 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC62 0.53 BNILDI_19790 cspG cold shock protein CspG 0.33 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli BL21 0.53 ECD_00992 cold shock protein-like protein, cold-inducible 0.33 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase — —
Escherichia coli ECRC99 0.53 KEDOAH_23015 cspG cold shock protein CspG 0.33 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.53 JDDGAC_08340 cspG cold shock protein CspG 0.33 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB — —
Lysobacter sp. OAE881 0.53 ABIE51_RS13800 cold-shock protein 0.29 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.78 11
Pseudomonas putida KT2440 0.50 PP_2463 nucleic acid cold-shock chaperone 0.34 PP_4710 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens FW300-N2C3 0.50 AO356_00920 cold-shock protein 0.33 AO356_07400 pseudouridine synthase 0.28 42
Pseudomonas fluorescens SBW25 0.50 PFLU_RS20330 cold-shock protein 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas sp. RS175 0.50 PFR28_02727 Cold shock protein CapB 0.33 PFR28_00092 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens GW456-L13 0.50 PfGW456L13_3902 Cold shock protein CspG 0.33 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_20865 cold-shock protein 0.33 AO353_05550 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.50 Pf6N2E2_171 Cold shock protein CspG 0.33 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_6025 Cold shock protein CspG 0.33 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas fluorescens SBW25-INTG 0.50 PFLU_RS20330 cold-shock protein 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB low > 109
Pseudomonas sp. S08-1 0.48 OH686_17410 Cold shock protein of CSP family 0.34 OH686_17155 tRNA pseudouridine(55) synthase — —
Pseudomonas stutzeri RCH2 0.47 Psest_1239 Cold shock proteins 0.36 Psest_0983 tRNA pseudouridine 55 synthase — —

Not shown: 4 genomes with orthologs for PGA1_c26780 only; 46 genomes with orthologs for PGA1_c32950 only