| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_1137 | | helix-turn-helix domain containing protein, AraC type | 1.0 | HP15_2675 | | pseudouridine synthase, Rsu | 0.43 | 19 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_03242 | | hypothetical protein | 0.46 | PFR28_00665 | | Ribosomal small subunit pseudouridine synthase A | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5706 | | Transcriptional regulator, AraC family | 0.46 | Pf6N2E2_2785 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_3486 | | Transcriptional regulator, AraC family | 0.47 | Pf1N1B4_3297 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_18975 | | AraC family transcriptional regulator | 0.45 | AO356_04690 | | 16S rRNA pseudouridine(516) synthase | low | > 104 |
| Pseudomonas sp. S08-1 | 0.46 | OH686_20555 | | Transcriptional regulator, AraC family | 0.48 | OH686_05950 | | SSU rRNA pseudouridine(516) synthase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_02805 | | AraC family transcriptional regulator | 0.47 | AO353_17535 | | 16S rRNA pseudouridine(516) synthase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_21505 | | AraC family transcriptional regulator | 0.46 | PS417_07010 | | pseudouridine synthase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS23120 | | AraC family transcriptional regulator | 0.47 | PFLU_RS07085 | | pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS23120 | | AraC family transcriptional regulator | 0.47 | PFLU_RS07085 | | pseudouridine synthase | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_2014 | | Transcriptional regulator, AraC family | 0.49 | PfGW456L13_4535 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_00612 | | putative HTH-type transcriptional regulator | 0.26 | MPMX26_01203 | | Ribosomal small subunit pseudouridine synthase A | — | — |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_2474 | | AraC-type DNA-binding domain-containing proteins | 0.47 | Psest_3049 | | pseudouridine synthase | low | > 67 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS36520 | | AraC family transcriptional regulator | 0.28 | RR42_RS15880 | | pseudouridine synthase | low | > 128 |
| Dechlorosoma suillum PS | 0.28 | Dsui_1103 | | DNA-binding domain-containing protein, AraC-type | 0.28 | Dsui_0824 | | pseudouridine synthase family protein | low | > 51 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS28200 | | AraC family transcriptional regulator | 0.29 | ABID97_RS09900 | | 16S rRNA pseudouridine(516) synthase | low | > 91 |
| Ralstonia solanacearum GMI1000 | 0.26 | RS_RS20245 | | AraC family transcriptional regulator | 0.31 | RS_RS03390 | | 16S rRNA pseudouridine(516) synthase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_01205 | | transcriptional regulator, AraC family | 0.27 | H281DRAFT_04053 | | ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) | low | > 103 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS18780 | | AraC family transcriptional regulator | 0.32 | UW163_RS00960 | | 16S rRNA pseudouridine(516) synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS20395 | | AraC family transcriptional regulator | 0.32 | RALBFv3_RS12605 | | 16S rRNA pseudouridine(516) synthase | low | > 76 |
| Variovorax sp. SCN45 | 0.25 | GFF2648 | | Transcriptional regulator, AraC family | 0.28 | GFF3076 | | SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) | low | > 127 |
| Paraburkholderia graminis OAS925 | 0.25 | ABIE53_005416 | | AraC-like DNA-binding protein | 0.28 | ABIE53_003276 | | 16S rRNA pseudouridine516 synthase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.25 | BPHYT_RS28045 | | AraC family transcriptional regulator | 0.27 | BPHYT_RS15560 | | pseudouridine synthase | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS02345 | | AraC family transcriptional regulator | 0.31 | RPSI07_RS20655 | | 16S rRNA pseudouridine(516) synthase | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.25 | ABZR87_RS17455 | | AraC family transcriptional regulator | 0.27 | ABZR87_RS08605 | | pseudouridine synthase | low | > 80 |
| Pseudomonas putida KT2440 | 0.25 | PP_3659 | | transcriptional regulator, AraC family | 0.48 | PP_1409 | | ribosomal small subunit pseudouridine synthase A | low | > 96 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.23 | GFF3409 | | Transcriptional regulator, AraC family | 0.26 | GFF5277 | | Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
Not shown: 8 genomes with orthologs for HP15_1137 only; 12 genomes with orthologs for HP15_2675 only