Conservation of cofitness between PS417_27035 and PS417_12855 in Pseudomonas simiae WCS417

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27035 FAD-linked oxidase 1.0 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase 0.56 2
Pseudomonas fluorescens SBW25 0.99 PFLU_RS28690 FAD-binding oxidoreductase 0.95 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS28690 FAD-binding oxidoreductase 0.95 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas orientalis W4I3 0.99 QF045_RS01425 FAD-binding oxidoreductase 0.95 QF045_RS17005 3-phosphoshikimate 1-carboxyvinyltransferase 0.83 61
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05547 putative FAD-linked oxidoreductase 0.93 GEMAOFIL_02820 3-phosphoshikimate 1-carboxyvinyltransferase low > 96
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4851 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal 0.69 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4851 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal 0.69 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_1492 FAD/FMN-containing dehydrogenases 0.16 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS16560 2-hydroxyacid dehydrogenase 0.26 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS13750 D-2-hydroxyacid dehydrogenase 0.24 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04480 FAD/FMN-containing dehydrogenase 0.24 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS05170 FAD-binding oxidoreductase 0.24 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase low > 153
Rhizobium sp. OAE497 0.30 ABIE40_RS21615 FAD-binding oxidoreductase 0.66 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS06435 2-hydroxyacid dehydrogenase 0.24 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase low > 128
Paraburkholderia graminis OAS925 0.30 ABIE53_002925 FAD/FMN-containing dehydrogenase 0.23 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.29 RS_RS07835 FAD-binding oxidoreductase 0.24 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS13840 FAD-binding oxidoreductase 0.24 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia solanacearum PSI07 0.29 RPSI07_RS15590 FAD-binding oxidoreductase 0.24 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.29 UW163_RS15210 FAD-binding oxidoreductase 0.24 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS01900 FAD-binding oxidoreductase 0.24 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS09620 FAD-binding oxidoreductase 0.17 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS06545 FAD-binding oxidoreductase 0.19 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.26 Atu2739 oxidoreductase 0.65 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.25 CA264_13425 FAD-binding oxidoreductase 0.20 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1567 D-lactate dehydrogenase (cytochrome) (RefSeq) 0.17 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0827 glycolate oxidase, subunit GlcD, putative (TIGR) 0.15 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Mycobacterium tuberculosis H37Rv 0.22 Rv0161 Possible oxidoreductase 0.17 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —
Fusobacterium nucleatum SB010 0.22 HUW76_09430 FAD-binding oxidoreductase 0.20 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase low > 35
Escherichia coli Nissle 1917 0.18 ECOLIN_RS17140 glycolate oxidase subunit GlcD 0.22 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli BL21 0.18 ECD_02848 glycolate oxidase subunit, FAD-linked 0.21 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Escherichia coli ECOR38 0.18 HEPCGN_17995 glcD glycolate oxidase subunit GlcD 0.22 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 88
Escherichia coli ECOR27 0.18 NOLOHH_10920 glcD glycolate oxidase subunit GlcD 0.21 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Escherichia coli ECRC62 0.18 BNILDI_00595 glcD glycolate oxidase subunit GlcD 0.21 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_00727 putative FAD-linked oxidoreductase 0.21 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Escherichia fergusonii Becca 0.18 EFB2_00835 putative FAD-linked oxidoreductase 0.22 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli BW25113 0.18 b2979 glcD glycolate dehydrogenase, putative FAD-linked subunit (from data) 0.21 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Escherichia coli ECRC102 0.12 NIAGMN_18090 ygcU Uncharacterized FAD-linked oxidoreductase YgcU 0.21 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC101 0.12 MCAODC_10845 ygcU Uncharacterized FAD-linked oxidoreductase YgcU 0.21 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC99 0.12 KEDOAH_07810 ygcU Uncharacterized FAD-linked oxidoreductase YgcU 0.21 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC98 0.12 JDDGAC_23985 ygcU Uncharacterized FAD-linked oxidoreductase YgcU 0.21 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC100 0.12 OKFHMN_20320 ygcU Uncharacterized FAD-linked oxidoreductase YgcU 0.21 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 79

Not shown: 49 genomes with orthologs for PS417_27035 only; 34 genomes with orthologs for PS417_12855 only