Conservation of cofitness between GFF1652 and GFF2434 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1652 tRNA (5-methoxyuridine) 34 synthase 1.0 GFF2434 Iron-sulfur cluster assembly scaffold protein IscU 0.38 19
Escherichia coli ECRC62 0.94 BNILDI_15455 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 BNILDI_12095 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_01857 tRNA U34 carboxymethyltransferase 0.99 OHPLBJKB_01180 Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECOR38 0.94 HEPCGN_04630 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 HEPCGN_20765 iscU Iron-sulfur cluster assembly scaffold protein IscU low > 87
Escherichia coli BL21 0.94 ECD_01842 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent 0.99 ECD_02421 iron-sulfur cluster assembly scaffold protein — —
Escherichia coli ECOR27 0.94 NOLOHH_16665 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 NOLOHH_13295 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECRC98 0.94 JDDGAC_00795 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 JDDGAC_25300 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECRC99 0.94 KEDOAH_01885 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 KEDOAH_06595 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECRC100 0.94 OKFHMN_26220 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 OKFHMN_21625 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECRC102 0.94 NIAGMN_01840 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 NIAGMN_19395 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli ECRC101 0.94 MCAODC_19185 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 MCAODC_12155 iscU Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli BW25113 0.94 b1871 yecP predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) 0.99 b2529 iscU scaffold protein (NCBI) — —
Escherichia fergusonii Becca 0.94 EFB2_02071 tRNA U34 carboxymethyltransferase 0.98 EFB2_01361 Iron-sulfur cluster assembly scaffold protein IscU — —
Escherichia coli Nissle 1917 0.94 ECOLIN_RS10700 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.99 ECOLIN_RS14360 Fe-S cluster assembly scaffold IscU — —
Enterobacter sp. TBS_079 0.92 MPMX20_02776 tRNA U34 carboxymethyltransferase 0.97 MPMX20_03410 Iron-sulfur cluster assembly scaffold protein IscU — —
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0686 tRNA (mo5U34)-methyltransferase 0.97 EX28DRAFT_0111 FeS cluster assembly scaffold IscU low > 76
Klebsiella michiganensis M5al 0.88 BWI76_RS18195 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.98 BWI76_RS21155 iron-sulfur cluster scaffold-like protein — —
Serratia liquefaciens MT49 0.82 IAI46_14675 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.92 IAI46_19350 Fe-S cluster assembly scaffold IscU low > 86
Dickeya dianthicola ME23 0.81 DZA65_RS10475 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.91 DZA65_RS16715 Fe-S cluster assembly scaffold IscU low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS10065 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.91 HGI48_RS15640 Fe-S cluster assembly scaffold IscU — —
Dickeya dadantii 3937 0.80 DDA3937_RS10035 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.91 DDA3937_RS15540 Fe-S cluster assembly scaffold IscU — —
Pectobacterium carotovorum WPP14 0.76 HER17_RS11890 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.93 HER17_RS06020 Fe-S cluster assembly scaffold IscU low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05895 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.87 CSW01_03890 Fe-S cluster assembly scaffold IscU — —
Shewanella sp. ANA-3 0.64 Shewana3_1950 putative methyltransferase (RefSeq) 0.84 Shewana3_2279 scaffold protein (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2082 putative methyltransferase (RefSeq) 0.85 Shew_2316 scaffold protein (RefSeq) — —
Shewanella oneidensis MR-1 0.64 SO2436 methyltransferase, putative (NCBI ptt file) 0.84 SO2265 NifU family protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.62 Sama_1846 methyltransferase, putative (RefSeq) 0.85 Sama_1294 scaffold protein (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_06450 tRNA (mo5U34)-methyltransferase 0.83 AO356_06640 scaffolding protein — —
Pseudomonas sp. RS175 0.54 PFR28_00318 tRNA U34 carboxymethyltransferase 0.83 PFR28_00287 Iron-sulfur cluster assembly scaffold protein IscU — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3158 tRNA (5-methoxyuridine) 34 synthase 0.83 Pf6N2E2_3188 Iron-sulfur cluster assembly scaffold protein IscU — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_826 tRNA (5-methoxyuridine) 34 synthase 0.83 Pf1N1B4_864 Iron-sulfur cluster assembly scaffold protein IscU — —
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_16015 tRNA (mo5U34)-methyltransferase 0.83 AO353_15840 scaffolding protein — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.81 PFLU_RS24850 Fe-S cluster assembly scaffold IscU — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS05290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.81 PFLU_RS24850 Fe-S cluster assembly scaffold IscU — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4812 tRNA (5-methoxyuridine) 34 synthase 0.82 PfGW456L13_4872 Iron-sulfur cluster assembly scaffold protein IscU — —
Pseudomonas putida KT2440 0.53 PP_1440 tRNA (mo5U34)-methyltransferase 0.82 PP_0843 scaffold protein involved in iron-sulfur cluster assembly — —
Pseudomonas simiae WCS417 0.53 PS417_05220 tRNA methyltransferase 0.82 PS417_23195 scaffolding protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_3947 Methyltransferase, putative 0.82 Psyr_1238 FeS cluster assembly scaffold IscU — —
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_3947 Methyltransferase, putative 0.82 Psyr_1238 FeS cluster assembly scaffold IscU — —
Pseudomonas sp. S08-1 0.51 OH686_05375 tRNA (mo5U34)-methyltransferase 0.84 OH686_17480 Iron-sulfur cluster assembly scaffold protein IscU — —
Pseudomonas stutzeri RCH2 0.51 Psest_3085 methyltransferase, putative 0.82 Psest_1252 FeS cluster assembly scaffold IscU — —
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1515 methyltransferase, putative 0.86 B158DRAFT_1460 FeS cluster assembly scaffold IscU — —

Not shown: 5 genomes with orthologs for GFF1652 only; 24 genomes with orthologs for GFF2434 only