Conservation of cofitness between GFF3115 and GFF1857 in Variovorax sp. SCN45

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF3115 Methionine ABC transporter substrate-binding protein 1.0 GFF1857 FIG00553873: hypothetical protein 0.52 20
Variovorax sp. OAS795 0.83 ABID97_RS21750 MetQ/NlpA family ABC transporter substrate-binding protein 0.23 ABID97_RS25910 FAD-binding oxidoreductase low > 91
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS08955 methionine ABC transporter substrate-binding protein 0.61 HSERO_RS05840 FAD-dependent oxidoreductase low > 78
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS28475 dioxygenase 0.75 RR42_RS34300 FAD-dependent oxidoreductase low > 128
Ralstonia solanacearum UW163 0.59 UW163_RS04460 MetQ/NlpA family lipoprotein 0.73 UW163_RS04345 FAD-binding oxidoreductase — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS09135 MetQ/NlpA family lipoprotein 0.73 RALBFv3_RS09245 FAD-binding oxidoreductase low > 76
Ralstonia solanacearum PSI07 0.58 RPSI07_RS08135 MetQ/NlpA family lipoprotein 0.74 RPSI07_RS08030 FAD-binding oxidoreductase low > 81
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS04530 MetQ/NlpA family lipoprotein 0.74 ABZR87_RS04700 FAD-binding oxidoreductase low > 80
Ralstonia solanacearum GMI1000 0.58 RS_RS16970 MetQ/NlpA family lipoprotein 0.74 RS_RS17075 FAD-binding oxidoreductase — —
Paraburkholderia graminis OAS925 0.58 ABIE53_005156 D-methionine transport system substrate-binding protein 0.22 ABIE53_001891 glycine/D-amino acid oxidase-like deaminating enzyme low > 113
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_01524 D-methionine transport system substrate-binding protein 0.61 H281DRAFT_02574 Glycine/D-amino acid oxidase (deaminating) 0.34 11
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02715 dioxygenase 0.58 BPHYT_RS13575 FAD-dependent oxidoreductase low > 109
Azospirillum sp. SherDot2 0.55 MPMX19_05549 D-methionine-binding lipoprotein MetQ 0.32 MPMX19_02773 Gamma-glutamylputrescine oxidoreductase low > 112
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS01570 MetQ/NlpA family lipoprotein 0.61 QEN71_RS35580 FAD-binding oxidoreductase low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF5039 Methionine ABC transporter substrate-binding protein 0.19 GFF2043 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster low > 90
Sinorhizobium meliloti 1021 0.51 SMc03157 outer membrane lipoprotein transmembrane 0.30 SMc01576 oxidoreductase low > 103
Agrobacterium fabrum C58 0.51 Atu4489 outer membrane lipoprotein 0.28 Atu2560 oxidoreductase low > 89
Rhizobium sp. OAE497 0.49 ABIE40_RS23105 MetQ/NlpA family ABC transporter substrate-binding protein 0.33 ABIE40_RS18495 FAD-binding oxidoreductase low > 107
Azospirillum brasilense Sp245 0.49 AZOBR_RS19465 dioxygenase 0.33 AZOBR_RS25655 oxidoreductase low > 97
Bosea sp. OAE506 0.46 ABIE41_RS03510 MetQ/NlpA family ABC transporter substrate-binding protein 0.46 ABIE41_RS10670 FAD-binding oxidoreductase low > 77
Rhodospirillum rubrum S1H 0.45 Rru_A2417 Lipoprotein YaeC (NCBI) 0.33 Rru_A2874 FAD dependent oxidoreductase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.45 TX73_007330 MetQ/NlpA family ABC transporter substrate-binding protein 0.30 TX73_013660 FAD-dependent oxidoreductase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF23 Methionine ABC transporter substrate-binding protein 0.14 GFF3084 FIG00553873: hypothetical protein low > 78
Escherichia coli BW25113 0.43 b0197 metQ DL-methionine transporter subunit (NCBI) 0.23 b1301 puuB gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR38 0.43 HEPCGN_08000 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 HEPCGN_25775 puuB gamma-glutamylputrescine oxidase low > 87
Escherichia coli ECOR27 0.43 NOLOHH_02405 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 NOLOHH_20110 puuB gamma-glutamylputrescine oxidase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_03464 D-methionine-binding lipoprotein MetQ 0.23 OHPLBJKB_02381 Gamma-glutamylputrescine oxidoreductase low > 73
Pantoea sp. MT58 0.43 IAI47_15395 MetQ/NlpA family lipoprotein 0.23 IAI47_07110 FAD-binding oxidoreductase low > 76
Escherichia coli BL21 0.43 ECD_00196 DL-methionine transporter subunit 0.23 ECD_01278 gamma-glutamylputrescine oxidoreductase low > 61
Escherichia coli ECRC62 0.43 BNILDI_09265 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 BNILDI_18260 puuB gamma-glutamylputrescine oxidase low > 75
Rahnella sp. WP5 0.43 EX31_RS12890 MetQ/NlpA family lipoprotein 0.23 EX31_RS17910 FAD-binding oxidoreductase low > 89
Escherichia coli ECRC102 0.42 NIAGMN_07910 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 NIAGMN_26595 puuB gamma-glutamylputrescine oxidase — —
Escherichia coli ECRC100 0.42 OKFHMN_10060 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 OKFHMN_02425 puuB gamma-glutamylputrescine oxidase low > 80
Escherichia coli ECRC101 0.42 MCAODC_00575 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 MCAODC_15845 puuB gamma-glutamylputrescine oxidase low > 87
Escherichia coli ECRC98 0.42 JDDGAC_13655 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 JDDGAC_04970 puuB gamma-glutamylputrescine oxidase low > 86
Serratia liquefaciens MT49 0.42 IAI46_20085 MetQ/NlpA family lipoprotein 0.23 IAI46_17170 FAD-binding oxidoreductase low > 86
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3785 lipoprotein, YaeC family 0.23 EX28DRAFT_1502 Glycine/D-amino acid oxidases (deaminating) low > 76
Klebsiella michiganensis M5al 0.42 BWI76_RS05355 methionine ABC transporter substrate-binding protein MetQ 0.23 BWI76_RS10690 gamma-glutamylputrescine oxidoreductase low > 92
Escherichia coli ECRC99 0.42 KEDOAH_18095 metQ methionine ABC transporter substrate-binding lipoprotein MetQ 0.23 KEDOAH_26350 puuB gamma-glutamylputrescine oxidase — —

Not shown: 10 genomes with orthologs for GFF3115 only; 32 genomes with orthologs for GFF1857 only