Conservation of cofitness between Psest_3743 and Psest_1402 in Pseudomonas stutzeri RCH2

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3743 Regulator of sigma D 1.0 Psest_1402 Putative threonine efflux protein 0.28 4
Pseudomonas sp. S08-1 0.69 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD 0.42 OH686_00600 Transporter, LysE family low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.39 Psyr_3234 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_0056 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 0.39 Psyr_3234 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas sp. RS175 0.63 PFR28_04361 Regulator of sigma D 0.33 PFR28_02911 Cysteine/O-acetylserine efflux protein low > 88
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_861 Regulator of sigma D 0.37 PfGW456L13_2315 Transporter, LysE family low > 87
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4435 Regulator of sigma D 0.33 Pf6N2E2_6076 Transporter, LysE family low > 103
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_08965 transcriptional regulator 0.35 AO353_01100 lysine transporter LysE low > 101
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2190 Regulator of sigma D 0.36 Pf1N1B4_193 Transporter, LysE family low > 87
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_12810 transcriptional regulator 0.34 AO356_20945 lysine transporter LysE low > 104
Pseudomonas putida KT2440 0.59 PP_0191 Transcriptional regulatory protein AlgQ 0.38 PP_3405 conserved membrane protein of unknown function low > 96
Pseudomonas simiae WCS417 0.58 PS417_27505 transcriptional regulator 0.36 PS417_14335 lysine transporter LysE low > 88
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.38 PFLU_RS16225 LysE family translocator low > 109
Pseudomonas fluorescens SBW25 0.57 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.38 PFLU_RS16225 LysE family translocator low > 109
Shewanella sp. ANA-3 0.33 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.32 Shewana3_2742 lysine exporter protein LysE/YggA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.32 Sama_0386 anti-RNA polymerase sigma 70 factor (RefSeq) 0.24 Sama_2015 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.32 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.30 Shew_1684 lysine exporter protein LysE/YggA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.32 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.32 SO1716 transporter, LysE family (NCBI ptt file) low > 76
Rahnella sp. WP5 0.28 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.28 EX31_RS05815 LysE family translocator low > 89
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_01710 Rsd/AlgQ family anti-sigma factor 0.32 CSW01_08610 LysE family translocator low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4197 Regulator of sigma D 0.19 GFF2102 Transporter, LysE family low > 78
Pantoea sp. MT58 0.24 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.26 IAI47_01090 LysE family translocator low > 76
Escherichia coli ECOR38 0.24 HEPCGN_12005 rsd sigma D regulator 0.18 HEPCGN_20475 eamB cysteine/O-acetylserine transporter low > 85
Escherichia coli ECRC98 0.24 JDDGAC_16995 rsd sigma D regulator 0.18 JDDGAC_25015 eamB cysteine/O-acetylserine transporter — —
Escherichia coli BL21 0.24 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.17 ECD_02472 cysteine and O-acetylserine exporter low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_04055 Regulator of sigma D 0.18 OHPLBJKB_01128 Cysteine/O-acetylserine efflux protein low > 73
Escherichia coli BW25113 0.24 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.18 b2578 yfiK neutral amino-acid efflux system (NCBI) low > 76
Escherichia coli ECRC101 0.24 MCAODC_03870 rsd sigma D regulator 0.18 MCAODC_11880 eamB cysteine/O-acetylserine transporter — —
Escherichia coli ECOR27 0.24 NOLOHH_05515 rsd sigma D regulator 0.18 NOLOHH_13020 eamB cysteine/O-acetylserine transporter low > 57
Escherichia coli ECRC101 0.24 OKFHMN_13370 rsd sigma D regulator 0.18 OKFHMN_21350 eamB cysteine/O-acetylserine transporter — —
Escherichia coli ECRC99 0.24 KEDOAH_14790 rsd sigma D regulator 0.18 KEDOAH_06870 eamB cysteine/O-acetylserine transporter — —
Escherichia coli ECRC62 0.24 BNILDI_06010 rsd sigma D regulator 0.18 BNILDI_11825 eamB cysteine/O-acetylserine transporter — —
Escherichia coli ECRC102 0.24 NIAGMN_11120 rsd sigma D regulator 0.18 NIAGMN_19120 eamB cysteine/O-acetylserine transporter — —
Escherichia fergusonii Becca 0.23 EFB2_04616 Regulator of sigma D 0.18 EFB2_01318 Cysteine/O-acetylserine efflux protein low > 86
Escherichia coli Nissle 1917 0.23 ECOLIN_RS23045 sigma D regulator 0.18 ECOLIN_RS14590 cysteine/O-acetylserine transporter low > 52
Pectobacterium carotovorum WPP14 0.23 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.28 HER17_RS05620 LysE family translocator low > 75
Erwinia tracheiphila SCR3 0.20 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.23 LU632_RS22775 LysE family translocator low > 74
Dickeya dianthicola 67-19 0.18 HGI48_RS01175 sigma D regulator 0.27 HGI48_RS19540 LysE family translocator low > 71
Dickeya dianthicola ME23 0.18 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.34 DZA65_RS07375 LysE family translocator low > 75
Dickeya dadantii 3937 0.18 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.26 DDA3937_RS19420 LysE family translocator low > 74

Not shown: 6 genomes with orthologs for Psest_3743 only; 18 genomes with orthologs for Psest_1402 only