| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3743 | | Regulator of sigma D | 1.0 | Psest_0136 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | 0.25 | 11 |
| Pseudomonas sp. S08-1 | 0.69 | OH686_13925 | | Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD | 0.79 | OH686_14490 | | ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 0.78 | Psyr_4914 | | amino acid ABC transporter membrane protein 2, PAAT family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_0056 | | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ | 0.78 | Psyr_4914 | | amino acid ABC transporter membrane protein 2, PAAT family | low | > 86 |
| Pseudomonas sp. RS175 | 0.63 | PFR28_04361 | | Regulator of sigma D | 0.80 | PFR28_04912 | | Octopine transport system permease protein OccM | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_4435 | | Regulator of sigma D | 0.78 | Pf6N2E2_3858 | | Amino acid ABC transporter, permease protein | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.63 | PfGW456L13_861 | | Regulator of sigma D | 0.79 | PfGW456L13_379 | | Amino acid ABC transporter, permease protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.63 | AO353_08965 | | transcriptional regulator | 0.79 | AO353_11985 | | ABC transporter permease | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2190 | | Regulator of sigma D | 0.79 | Pf1N1B4_1643 | | Amino acid ABC transporter, permease protein | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_12810 | | transcriptional regulator | 0.80 | AO356_09910 | | ABC transporter for L-Lysine, permease component 2 (from data) | low | > 104 |
| Pseudomonas putida KT2440 | 0.59 | PP_0191 | | Transcriptional regulatory protein AlgQ | 0.80 | PP_0280 | | Amino acid ABC transporter, permease protein | low | > 96 |
| Pseudomonas simiae WCS417 | 0.58 | PS417_27505 | | transcriptional regulator | 0.78 | PS417_01485 | | ABC transporter permease | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | 0.79 | PFLU_RS01525 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS29185 | | Rsd/AlgQ family anti-sigma factor | 0.79 | PFLU_RS01525 | | ABC transporter permease | low | > 109 |
| Marinobacter adhaerens HP15 | 0.48 | HP15_221 | | anti-RNA polymerase sigma 70 factor | 0.40 | HP15_3033 | | amino acid ABC transporter, inner membrane subunit | low | > 73 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_0434 | | anti-RNA polymerase sigma 70 factor (RefSeq) | 0.22 | Shewana3_0881 | | polar amino acid ABC transporter, inner membrane subunit (RefSeq) | low | > 73 |
| Rahnella sp. WP5 | 0.28 | EX31_RS16820 | | Rsd/AlgQ family anti-sigma factor | 0.34 | EX31_RS19550 | | ABC transporter permease | low | > 89 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS01560 | | Rsd/AlgQ family anti-sigma factor | 0.33 | BWI76_RS20325 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | low | > 92 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_01325 | | Rsd/AlgQ family anti-sigma factor | 0.34 | IAI46_17790 | | ABC transporter permease | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_01710 | | Rsd/AlgQ family anti-sigma factor | 0.44 | CSW01_09320 | | amino acid ABC transporter permease | low | > 62 |
| Enterobacter sp. TBS_079 | 0.24 | MPMX20_00218 | | Regulator of sigma D | 0.33 | MPMX20_03242 | | Histidine transport system permease protein HisM | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.24 | GFF4197 | | Regulator of sigma D | 0.34 | GFF1916 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 78 |
| Pantoea sp. MT58 | 0.24 | IAI47_18080 | | Rsd/AlgQ family anti-sigma factor | 0.41 | IAI47_13235 | | ABC transporter permease subunit | low | > 76 |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_14790 | rsd | sigma D regulator | 0.34 | KEDOAH_05455 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_16995 | rsd | sigma D regulator | 0.34 | JDDGAC_26700 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_04055 | | Regulator of sigma D | 0.33 | OHPLBJKB_01398 | | Histidine transport system permease protein HisM | low | > 73 |
| Escherichia coli BW25113 | 0.24 | b3995 | rsd | stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) | 0.34 | b2307 | hisM | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_11120 | rsd | sigma D regulator | 0.34 | NIAGMN_20510 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli ECRC101 | 0.24 | OKFHMN_13370 | rsd | sigma D regulator | 0.34 | OKFHMN_22740 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_05515 | rsd | sigma D regulator | 0.34 | NOLOHH_14360 | hisM | Histidine transport system permease protein HisM | low | > 57 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_12005 | rsd | sigma D regulator | 0.34 | HEPCGN_21935 | hisM | Histidine transport system permease protein HisM | low | > 85 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_03870 | rsd | sigma D regulator | 0.34 | MCAODC_13780 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli ECRC62 | 0.24 | BNILDI_06010 | rsd | sigma D regulator | 0.34 | BNILDI_13280 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli BL21 | 0.24 | ECD_03872 | | stationary phase protein, binds sigma 70 RNA polymerase subunit | 0.34 | ECD_02232 | | histidine ABC transporter permease | low | > 60 |
| Enterobacter asburiae PDN3 | 0.24 | EX28DRAFT_4537 | | Regulator of sigma D | 0.33 | EX28DRAFT_0297 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | low | > 76 |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS23045 | | sigma D regulator | 0.34 | ECOLIN_RS13380 | | ABC transporter permease | low | > 52 |
| Escherichia fergusonii Becca | 0.23 | EFB2_04616 | | Regulator of sigma D | 0.34 | EFB2_01551 | | Histidine transport system permease protein HisM | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.23 | HER17_RS20375 | | Rsd/AlgQ family anti-sigma factor | 0.44 | HER17_RS01825 | | ABC transporter permease | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.20 | LU632_RS00975 | | Rsd/AlgQ family anti-sigma factor | 0.29 | LU632_RS09670 | artM | arginine ABC transporter permease ArtM | low | > 74 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS01175 | | sigma D regulator | 0.39 | HGI48_RS15115 | | ABC transporter permease subunit | low | > 71 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS01220 | | Rsd/AlgQ family anti-sigma factor | 0.39 | DZA65_RS15865 | | ABC transporter permease subunit | low | > 75 |
Not shown: 5 genomes with orthologs for Psest_3743 only; 18 genomes with orthologs for Psest_0136 only