Conservation of cofitness between PS417_04525 and PS417_05880 in Pseudomonas simiae WCS417

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04525 16S rRNA methyltransferase 1.0 PS417_05880 ribosomal protein S12 methylthiotransferase 0.26 12
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS04570 class I SAM-dependent methyltransferase 0.99 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS04570 class I SAM-dependent methyltransferase 0.99 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO low > 109
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.97 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 87
Pseudomonas sp. RS175 0.90 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.96 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO low > 88
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_06940 16S rRNA methyltransferase 0.95 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.37 2
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_14995 16S rRNA methyltransferase 0.96 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 0.33 45
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.96 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.35 63
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.94 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.26 6
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase low > 86
Pseudomonas sp. S08-1 0.77 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.68 6
Pseudomonas putida KT2440 0.73 PP_0761 Ribosomal RNA small subunit methyltransferase C 0.89 PP_1197 ribosomal protein S12 methylthiotransferase low > 96
Pseudomonas stutzeri RCH2 0.69 Psest_3224 16S RNA G1207 methylase RsmC 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO low > 67
Acinetobacter radioresistens SK82 0.45 MPMX26_02491 Ribosomal RNA small subunit methyltransferase C 0.68 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.71 7
Marinobacter adhaerens HP15 0.32 HP15_2266 rRNA (guanine-N(2)-)-methyltransferase 0.75 HP15_2459 MiaB-like tRNA modifying enzyme YliG low > 73
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_03280 16S rRNA methyltransferase 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO low > 62
Shewanella sp. ANA-3 0.29 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.64 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.29 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.71 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase low > 78
Shewanella oneidensis MR-1 0.28 SO0828 conserved hypothetical protein (NCBI ptt file) 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) low > 76
Escherichia coli BL21 0.28 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.71 ECD_00802 ribosomal protein S12 methylthiotransferase low > 60
Escherichia coli BW25113 0.28 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.71 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.28 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO — —
Dickeya dadantii 3937 0.27 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.69 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO low > 74
Escherichia coli ECRC99 0.27 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC98 0.27 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECOR27 0.27 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC101 0.27 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia fergusonii Becca 0.27 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.71 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO low > 86
Escherichia coli ECRC102 0.27 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Escherichia coli ECRC101 0.27 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_3579 16S RNA G1207 methylase RsmC 0.70 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO low > 76
Escherichia coli ECOR38 0.27 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.71 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO low > 73
Klebsiella michiganensis M5al 0.27 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.71 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO low > 92
Escherichia coli ECRC62 0.27 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.71 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO — —
Enterobacter sp. TBS_079 0.27 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C 0.70 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO low > 85
Dickeya dianthicola ME23 0.26 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO low > 75
Shewanella amazonensis SB2B 0.26 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.64 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.69 3
Dickeya dianthicola 67-19 0.26 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.70 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO low > 71
Pectobacterium carotovorum WPP14 0.25 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.70 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO low > 75

Not shown: 4 genomes with orthologs for PS417_04525 only; 46 genomes with orthologs for PS417_05880 only