Conservation of cofitness between EX31_RS03165 and EX31_RS21440 in Rahnella sp. WP5

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS03165 CdaR family transcriptional regulator 1.0 EX31_RS21440 arginine exporter ArgO 0.37 17
Pectobacterium carotovorum WPP14 0.85 HER17_RS05665 CdaR family transcriptional regulator 0.67 HER17_RS02705 arginine exporter ArgO low > 75
Dickeya dianthicola ME23 0.84 DZA65_RS17080 CdaR family transcriptional regulator 0.32 DZA65_RS02210 amino acid transporter low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS15995 CdaR family transcriptional regulator 0.32 HGI48_RS02085 amino acid transporter low > 71
Dickeya dadantii 3937 0.84 DDA3937_RS15855 CdaR family transcriptional regulator 0.32 DDA3937_RS02115 amino acid transporter low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF59 Sugar diacid utilization regulator SdaR 0.69 GFF3018 Arginine exporter protein ArgO low > 78
Escherichia coli ECOR27 0.83 NOLOHH_02595 cdaR DNA-binding transcriptional regulator CdaR 0.73 NOLOHH_11320 argO arginine exporter ArgO low > 75
Escherichia coli ECRC62 0.83 BNILDI_09075 cdaR DNA-binding transcriptional regulator CdaR 0.70 BNILDI_09855 argO arginine exporter ArgO low > 75
Escherichia coli Nissle 1917 0.83 ECOLIN_RS00900 DNA-binding transcriptional regulator CdaR 0.73 ECOLIN_RS16245 arginine exporter ArgO low > 55
Escherichia fergusonii Becca 0.83 EFB2_03882 Carbohydrate diacid regulator 0.73 EFB2_00983 Arginine exporter protein ArgO low > 86
Erwinia tracheiphila SCR3 0.83 LU632_RS19995 CdaR family transcriptional regulator 0.55 LU632_RS05560 LysE family transporter low > 74
Escherichia coli ECOR38 0.83 HEPCGN_08200 cdaR DNA-binding transcriptional regulator CdaR 0.73 HEPCGN_18715 argO arginine exporter ArgO low > 87
Escherichia coli BL21 0.83 ECD_00161 carbohydrate diacid regulon transcriptional regulator; autoregulator 0.70 ECD_02754 arginine transporter low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03500 Carbohydrate diacid regulator 0.70 OHPLBJKB_00793 Arginine exporter protein ArgO low > 73
Escherichia coli BW25113 0.83 b0162 yaeG orf, hypothetical protein (VIMSS) 0.70 b2923 argO arginine exporter protein (NCBI) low > 76
Escherichia coli ECRC101 0.83 MCAODC_00765 cdaR DNA-binding transcriptional regulator CdaR 0.73 MCAODC_09930 argO arginine exporter ArgO low > 87
Escherichia coli ECRC100 0.83 OKFHMN_10250 cdaR DNA-binding transcriptional regulator CdaR 0.73 OKFHMN_19410 argO arginine exporter ArgO low > 80
Escherichia coli ECRC102 0.83 NIAGMN_08100 cdaR DNA-binding transcriptional regulator CdaR 0.73 NIAGMN_17175 argO arginine exporter ArgO — —
Escherichia coli ECRC99 0.83 KEDOAH_17905 cdaR DNA-binding transcriptional regulator CdaR 0.73 KEDOAH_08730 argO arginine exporter ArgO — —
Escherichia coli ECRC98 0.83 JDDGAC_13845 cdaR DNA-binding transcriptional regulator CdaR 0.73 JDDGAC_23040 argO arginine exporter ArgO low > 86
Klebsiella michiganensis M5al 0.82 BWI76_RS05185 CdaR family transcriptional regulator 0.71 BWI76_RS23965 arginine exporter protein low > 92
Enterobacter sp. TBS_079 0.82 MPMX20_00848 Carbohydrate diacid regulator 0.73 MPMX20_03775 Arginine exporter protein ArgO low > 85
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3751 Sugar diacid utilization regulator 0.73 EX28DRAFT_2969 L-lysine exporter low > 76
Pantoea sp. MT58 0.81 IAI47_15555 CdaR family transcriptional regulator 0.73 IAI47_03705 arginine exporter ArgO low > 76
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.5386.1 Sugar diacid utilization regulator SdaR 0.29 Xcc-8004.1465.1 Transporter, LysE family low > 74
Shewanella oneidensis MR-1 0.43 SO1774 hypothetical Sugar diacid utilization regulator (NCBI ptt file) 0.35 SO2865 L-lysine exporter, putative (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.43 Shew_2528 transcriptional regulator, CdaR (RefSeq) 0.31 Shew_1845 lysine exporter protein LysE/YggA (RefSeq) low > 60
Shewanella sp. ANA-3 0.42 Shewana3_2682 CdaR family transcriptional regulator (RefSeq) 0.35 Shewana3_1653 lysine exporter protein LysE/YggA (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_18670 CdaR family transcriptional regulator 0.40 CSW01_02555 amino acid transporter low > 62
Serratia liquefaciens MT49 0.34 IAI46_05255 helix-turn-helix domain-containing protein 0.76 IAI46_20920 arginine exporter ArgO low > 86
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS12200 sugar diacid recognition domain-containing protein 0.32 QEN71_RS23615 LysE/ArgO family amino acid transporter low > 153
Pseudomonas simiae WCS417 0.28 PS417_13975 CdaR family transcriptional regulator 0.39 PS417_22175 amino acid transporter LysE low > 88
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_2940 Sugar diacid utilization regulator SdaR 0.41 PfGW456L13_1780 Transporter, LysE family low > 87
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_4999 Sugar diacid utilization regulator SdaR 0.41 Pf1N1B4_710 Transporter, LysE family low > 87
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS14640 CdaR family transcriptional regulator 0.40 PFLU_RS23800 amino acid transporter low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS14640 CdaR family transcriptional regulator 0.40 PFLU_RS23800 amino acid transporter low > 109
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_22865 CdaR family transcriptional regulator 0.39 AO356_05000 lysine transporter LysE low > 104
Pseudomonas sp. RS175 0.26 PFR28_02470 Carbohydrate diacid regulator 0.40 PFR28_00607 Arginine exporter protein ArgO low > 88
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_26905 CdaR family transcriptional regulator 0.40 AO353_03925 lysine transporter LysE low > 101
Pseudomonas putida KT2440 0.26 PP_3177 conserved protein of unknown function 0.39 PP_0916 Amino acid transporter LysE low > 96
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_3116 transcriptional regulator, CdaR family 0.40 Psyr_4058 Lysine exporter protein (LYSE/YGGA) low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_3116 transcriptional regulator, CdaR family 0.40 Psyr_4058 Lysine exporter protein (LYSE/YGGA) low > 86

Not shown: 0 genomes with orthologs for EX31_RS03165 only; 34 genomes with orthologs for EX31_RS21440 only